Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 MMAB-206ENST00000540016 945 ntTSL 3 BASIC20.43■□□□□ 0.86
SDC3O75056 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC20.43■□□□□ 0.86
SDC3O75056 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.43■□□□□ 0.86
SDC3O75056 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SDC3O75056 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SDC3O75056 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.43■□□□□ 0.86
SDC3O75056 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SDC3O75056 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.43■□□□□ 0.86
SDC3O75056 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.43■□□□□ 0.86
SDC3O75056 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SDC3O75056 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SDC3O75056 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SDC3O75056 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SDC3O75056 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
SDC3O75056 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SDC3O75056 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC20.42■□□□□ 0.86
SDC3O75056 AL158047.1-201ENST00000445918 881 ntBASIC20.42■□□□□ 0.86
SDC3O75056 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.42■□□□□ 0.86
SDC3O75056 FAM99A-202ENST00000538190 1989 ntBASIC20.42■□□□□ 0.86
SDC3O75056 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SDC3O75056 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SDC3O75056 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
SDC3O75056 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SDC3O75056 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SDC3O75056 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SDC3O75056 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SDC3O75056 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.41■□□□□ 0.86
SDC3O75056 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.41■□□□□ 0.86
SDC3O75056 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SDC3O75056 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SDC3O75056 AC128676.1-201ENST00000454392 318 ntBASIC20.41■□□□□ 0.86
SDC3O75056 CDV3P1-201ENST00000471403 739 ntBASIC20.41■□□□□ 0.86
SDC3O75056 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC20.41■□□□□ 0.86
SDC3O75056 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.41■□□□□ 0.86
SDC3O75056 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SDC3O75056 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SDC3O75056 AC127496.7-201ENST00000625110 1798 ntBASIC20.41■□□□□ 0.86
SDC3O75056 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SDC3O75056 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
SDC3O75056 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.4■□□□□ 0.86
SDC3O75056 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SDC3O75056 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SDC3O75056 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.4■□□□□ 0.86
SDC3O75056 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC20.4■□□□□ 0.86
SDC3O75056 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
SDC3O75056 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
SDC3O75056 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.4■□□□□ 0.86
SDC3O75056 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.4■□□□□ 0.86
SDC3O75056 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.4■□□□□ 0.86
SDC3O75056 FAM21FP-204ENST00000608637 956 ntBASIC20.4■□□□□ 0.86
SDC3O75056 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SDC3O75056 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SDC3O75056 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
SDC3O75056 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SDC3O75056 AC068473.5-201ENST00000616428 2072 ntBASIC20.39■□□□□ 0.86
SDC3O75056 AC079834.2-201ENST00000609776 1949 ntBASIC20.39■□□□□ 0.86
SDC3O75056 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
SDC3O75056 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
SDC3O75056 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SDC3O75056 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.39■□□□□ 0.85
SDC3O75056 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SDC3O75056 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SDC3O75056 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SDC3O75056 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.39■□□□□ 0.85
SDC3O75056 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC20.39■□□□□ 0.85
SDC3O75056 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC20.39■□□□□ 0.85
SDC3O75056 GCSHP5-201ENST00000443090 522 ntBASIC20.39■□□□□ 0.85
SDC3O75056 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC20.39■□□□□ 0.85
SDC3O75056 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.39■□□□□ 0.85
SDC3O75056 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.39■□□□□ 0.85
SDC3O75056 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.39■□□□□ 0.85
SDC3O75056 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SDC3O75056 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.39■□□□□ 0.85
SDC3O75056 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SDC3O75056 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.39■□□□□ 0.85
SDC3O75056 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.39■□□□□ 0.85
SDC3O75056 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.39■□□□□ 0.85
SDC3O75056 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
SDC3O75056 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SDC3O75056 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SDC3O75056 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SDC3O75056 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SDC3O75056 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SDC3O75056 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SDC3O75056 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SDC3O75056 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SDC3O75056 CLDN5-201ENST00000403084 2357 ntBASIC20.38■□□□□ 0.85
SDC3O75056 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
SDC3O75056 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.38■□□□□ 0.85
SDC3O75056 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SDC3O75056 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SDC3O75056 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.38■□□□□ 0.85
SDC3O75056 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
SDC3O75056 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SDC3O75056 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.38■□□□□ 0.85
SDC3O75056 UNC93B5-201ENST00000530315 699 ntBASIC20.38■□□□□ 0.85
SDC3O75056 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.38■□□□□ 0.85
SDC3O75056 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
SDC3O75056 CYP2T3P-201ENST00000601990 817 ntBASIC20.38■□□□□ 0.85
SDC3O75056 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms