Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC20.92■□□□□ 0.94
TRIM38O00635 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM38O00635 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM38O00635 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
TRIM38O00635 AP004607.7-201ENST00000527152 1677 ntBASIC20.92■□□□□ 0.94
TRIM38O00635 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM38O00635 AC073130.3-201ENST00000624389 2278 ntBASIC20.92■□□□□ 0.94
TRIM38O00635 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM38O00635 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM38O00635 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM38O00635 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM38O00635 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM38O00635 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.91■□□□□ 0.94
TRIM38O00635 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM38O00635 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM38O00635 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.91■□□□□ 0.94
TRIM38O00635 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM38O00635 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.91■□□□□ 0.94
TRIM38O00635 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM38O00635 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.91■□□□□ 0.94
TRIM38O00635 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.91■□□□□ 0.94
TRIM38O00635 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
TRIM38O00635 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.91■□□□□ 0.94
TRIM38O00635 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM38O00635 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.9■□□□□ 0.94
TRIM38O00635 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.9■□□□□ 0.94
TRIM38O00635 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM38O00635 TSPY20P-201ENST00000450910 630 ntBASIC20.9■□□□□ 0.94
TRIM38O00635 AC010141.2-201ENST00000452426 721 ntBASIC20.9■□□□□ 0.94
TRIM38O00635 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
TRIM38O00635 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM38O00635 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM38O00635 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM38O00635 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.9■□□□□ 0.94
TRIM38O00635 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
TRIM38O00635 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
TRIM38O00635 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM38O00635 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM38O00635 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM38O00635 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM38O00635 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM38O00635 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM38O00635 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM38O00635 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM38O00635 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.89■□□□□ 0.93
TRIM38O00635 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM38O00635 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
TRIM38O00635 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM38O00635 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.89■□□□□ 0.93
TRIM38O00635 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.89■□□□□ 0.93
TRIM38O00635 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
TRIM38O00635 AC138907.5-202ENST00000569484 235 ntBASIC20.89■□□□□ 0.93
TRIM38O00635 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.89■□□□□ 0.93
TRIM38O00635 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
TRIM38O00635 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM38O00635 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM38O00635 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM38O00635 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM38O00635 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
TRIM38O00635 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC20.88■□□□□ 0.93
TRIM38O00635 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM38O00635 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
TRIM38O00635 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
TRIM38O00635 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.88■□□□□ 0.93
TRIM38O00635 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.88■□□□□ 0.93
TRIM38O00635 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20.88■□□□□ 0.93
TRIM38O00635 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.88■□□□□ 0.93
TRIM38O00635 KRT18P6-201ENST00000555540 1265 ntBASIC20.88■□□□□ 0.93
TRIM38O00635 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM38O00635 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.88■□□□□ 0.93
TRIM38O00635 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.88■□□□□ 0.93
TRIM38O00635 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
TRIM38O00635 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM38O00635 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM38O00635 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM38O00635 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.88■□□□□ 0.93
TRIM38O00635 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM38O00635 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM38O00635 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM38O00635 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM38O00635 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM38O00635 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM38O00635 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM38O00635 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM38O00635 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.87■□□□□ 0.93
TRIM38O00635 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM38O00635 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM38O00635 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
TRIM38O00635 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.87■□□□□ 0.93
TRIM38O00635 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM38O00635 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.87■□□□□ 0.93
TRIM38O00635 SLC29A4P1-201ENST00000398760 971 ntBASIC20.87■□□□□ 0.93
TRIM38O00635 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.87■□□□□ 0.93
TRIM38O00635 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.87■□□□□ 0.93
TRIM38O00635 AC010536.3-201ENST00000620306 533 ntBASIC20.87■□□□□ 0.93
TRIM38O00635 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
TRIM38O00635 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.87■□□□□ 0.93
TRIM38O00635 AC244015.2-201ENST00000616358 1861 ntBASIC20.87■□□□□ 0.93
TRIM38O00635 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM38O00635 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms