Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HMGN4O00479 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HMGN4O00479 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
HMGN4O00479 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.41■□□□□ 0.7
HMGN4O00479 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HMGN4O00479 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HMGN4O00479 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
HMGN4O00479 AP004607.4-201ENST00000530158 1459 ntBASIC19.41■□□□□ 0.7
HMGN4O00479 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HMGN4O00479 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HMGN4O00479 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HMGN4O00479 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HMGN4O00479 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.4■□□□□ 0.7
HMGN4O00479 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HMGN4O00479 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
HMGN4O00479 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HMGN4O00479 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC19.4■□□□□ 0.7
HMGN4O00479 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.4■□□□□ 0.7
HMGN4O00479 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
HMGN4O00479 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC19.4■□□□□ 0.7
HMGN4O00479 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HMGN4O00479 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC19.4■□□□□ 0.7
HMGN4O00479 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
HMGN4O00479 KRT87P-202ENST00000534226 1464 ntBASIC19.4■□□□□ 0.7
HMGN4O00479 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
HMGN4O00479 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.4■□□□□ 0.7
HMGN4O00479 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
HMGN4O00479 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HMGN4O00479 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
HMGN4O00479 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.39■□□□□ 0.7
HMGN4O00479 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
HMGN4O00479 MIR638-201ENST00000385237 100 ntBASIC19.39■□□□□ 0.69
HMGN4O00479 AC027612.3-201ENST00000413684 1047 ntBASIC19.39■□□□□ 0.69
HMGN4O00479 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HMGN4O00479 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.39■□□□□ 0.69
HMGN4O00479 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HMGN4O00479 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.39■□□□□ 0.69
HMGN4O00479 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
HMGN4O00479 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGN4O00479 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGN4O00479 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
HMGN4O00479 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
HMGN4O00479 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.38■□□□□ 0.69
HMGN4O00479 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HMGN4O00479 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGN4O00479 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HMGN4O00479 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
HMGN4O00479 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.37■□□□□ 0.69
HMGN4O00479 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGN4O00479 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGN4O00479 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
HMGN4O00479 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.37■□□□□ 0.69
HMGN4O00479 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
HMGN4O00479 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HMGN4O00479 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGN4O00479 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGN4O00479 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGN4O00479 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGN4O00479 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGN4O00479 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.36■□□□□ 0.69
HMGN4O00479 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.36■□□□□ 0.69
HMGN4O00479 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGN4O00479 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
HMGN4O00479 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGN4O00479 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGN4O00479 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGN4O00479 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HMGN4O00479 AC092667.1-201ENST00000434301 2586 ntBASIC19.36■□□□□ 0.69
HMGN4O00479 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
HMGN4O00479 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
HMGN4O00479 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
HMGN4O00479 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGN4O00479 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HMGN4O00479 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGN4O00479 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGN4O00479 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.36■□□□□ 0.69
HMGN4O00479 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HMGN4O00479 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGN4O00479 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HMGN4O00479 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.36■□□□□ 0.69
HMGN4O00479 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGN4O00479 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
HMGN4O00479 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGN4O00479 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HMGN4O00479 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HMGN4O00479 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HMGN4O00479 AC073314.1-201ENST00000568729 2216 ntBASIC19.35■□□□□ 0.69
HMGN4O00479 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HMGN4O00479 POU5F1P4-201ENST00000413175 1085 ntBASIC19.35■□□□□ 0.69
HMGN4O00479 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC19.35■□□□□ 0.69
HMGN4O00479 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.35■□□□□ 0.69
HMGN4O00479 AC008175.2-201ENST00000612840 297 ntBASIC19.35■□□□□ 0.69
HMGN4O00479 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HMGN4O00479 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HMGN4O00479 AP005212.1-201ENST00000581547 1997 ntBASIC19.35■□□□□ 0.69
HMGN4O00479 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.35■□□□□ 0.69
HMGN4O00479 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HMGN4O00479 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HMGN4O00479 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGN4O00479 SLC25A24-204ENST00000569674 2357 ntBASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms