Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CBX4O00257 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CBX4O00257 DYM-203ENST00000442713 2147 ntTSL 2 BASIC21.34■■□□□ 1.01
CBX4O00257 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC21.34■■□□□ 1.01
CBX4O00257 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC21.34■■□□□ 1.01
CBX4O00257 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC21.34■■□□□ 1.01
CBX4O00257 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CBX4O00257 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC21.34■■□□□ 1.01
CBX4O00257 AL355802.2-201ENST00000402069 882 ntBASIC21.34■■□□□ 1.01
CBX4O00257 AC007322.1-201ENST00000426983 750 ntBASIC21.34■■□□□ 1.01
CBX4O00257 AC006970.2-201ENST00000450065 779 ntBASIC21.34■■□□□ 1.01
CBX4O00257 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC21.34■■□□□ 1.01
CBX4O00257 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
CBX4O00257 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CBX4O00257 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
CBX4O00257 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC21.34■■□□□ 1.01
CBX4O00257 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
CBX4O00257 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
CBX4O00257 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CBX4O00257 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CBX4O00257 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
CBX4O00257 UQCRFS1P1-201ENST00000435169 820 ntBASIC21.33■■□□□ 1.01
CBX4O00257 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC21.33■■□□□ 1.01
CBX4O00257 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC21.33■■□□□ 1.01
CBX4O00257 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.33■■□□□ 1.01
CBX4O00257 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC21.33■■□□□ 1.01
CBX4O00257 AC013268.1-206ENST00000638368 961 ntBASIC21.33■■□□□ 1.01
CBX4O00257 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC21.33■■□□□ 1.01
CBX4O00257 AC112229.1-201ENST00000639295 961 ntBASIC21.33■■□□□ 1.01
CBX4O00257 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC21.33■■□□□ 1.01
CBX4O00257 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CBX4O00257 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.33■■□□□ 1
CBX4O00257 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CBX4O00257 Z98882.1-201ENST00000622160 2253 ntBASIC21.32■■□□□ 1
CBX4O00257 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC21.32■■□□□ 1
CBX4O00257 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
CBX4O00257 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.32■■□□□ 1
CBX4O00257 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CBX4O00257 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC21.32■■□□□ 1
CBX4O00257 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
CBX4O00257 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
CBX4O00257 RBM17P2-201ENST00000616397 1405 ntBASIC21.32■■□□□ 1
CBX4O00257 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CBX4O00257 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC21.32■■□□□ 1
CBX4O00257 CNN2P6-201ENST00000439038 900 ntBASIC21.32■■□□□ 1
CBX4O00257 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
CBX4O00257 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
CBX4O00257 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC21.32■■□□□ 1
CBX4O00257 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC21.32■■□□□ 1
CBX4O00257 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
CBX4O00257 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CBX4O00257 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CBX4O00257 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CBX4O00257 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC21.31■■□□□ 1
CBX4O00257 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
CBX4O00257 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
CBX4O00257 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CBX4O00257 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.31■■□□□ 1
CBX4O00257 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC21.31■■□□□ 1
CBX4O00257 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CBX4O00257 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
CBX4O00257 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
CBX4O00257 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
CBX4O00257 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC21.31■■□□□ 1
CBX4O00257 AC245052.3-201ENST00000450182 901 ntBASIC21.31■■□□□ 1
CBX4O00257 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC21.31■■□□□ 1
CBX4O00257 WT1-AS_3.1-201ENST00000613262 234 ntBASIC21.31■■□□□ 1
CBX4O00257 AL109923.1-201ENST00000618799 583 ntBASIC21.31■■□□□ 1
CBX4O00257 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
CBX4O00257 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CBX4O00257 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.31■■□□□ 1
CBX4O00257 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CBX4O00257 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
CBX4O00257 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CBX4O00257 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.3■■□□□ 1
CBX4O00257 MIR663A-201ENST00000385250 93 ntBASIC21.3■■□□□ 1
CBX4O00257 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC21.3■■□□□ 1
CBX4O00257 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC21.3■■□□□ 1
CBX4O00257 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
CBX4O00257 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC21.3■■□□□ 1
CBX4O00257 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CBX4O00257 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CBX4O00257 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.3■■□□□ 1
CBX4O00257 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CBX4O00257 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.3■■□□□ 1
CBX4O00257 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CBX4O00257 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC21.3■■□□□ 1
CBX4O00257 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CBX4O00257 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.3■■□□□ 1
CBX4O00257 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CBX4O00257 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC21.29■■□□□ 1
CBX4O00257 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC21.29■■□□□ 1
CBX4O00257 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC21.29■■□□□ 1
CBX4O00257 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
CBX4O00257 ABHD17AP1-201ENST00000358206 933 ntBASIC21.29■■□□□ 1
CBX4O00257 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC21.29■■□□□ 1
CBX4O00257 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC21.29■■□□□ 1
CBX4O00257 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC21.29■■□□□ 1
CBX4O00257 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC21.29■■□□□ 1
CBX4O00257 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms