Protein–RNA interactions for Protein: Q9Y3B2

EXOSC1, Exosome complex component CSL4, humanhuman

Known RBP Predictions only

Length 195 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC1Q9Y3B2 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.68■□□□□ 0.58
EXOSC1Q9Y3B2 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
EXOSC1Q9Y3B2 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
EXOSC1Q9Y3B2 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC18.68■□□□□ 0.58
EXOSC1Q9Y3B2 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
EXOSC1Q9Y3B2 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
EXOSC1Q9Y3B2 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
EXOSC1Q9Y3B2 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
EXOSC1Q9Y3B2 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
EXOSC1Q9Y3B2 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
EXOSC1Q9Y3B2 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.68■□□□□ 0.58
EXOSC1Q9Y3B2 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC18.68■□□□□ 0.58
EXOSC1Q9Y3B2 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
EXOSC1Q9Y3B2 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
EXOSC1Q9Y3B2 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC18.68■□□□□ 0.58
EXOSC1Q9Y3B2 AC007225.1-201ENST00000566331 1836 ntBASIC18.67■□□□□ 0.58
EXOSC1Q9Y3B2 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.67■□□□□ 0.58
EXOSC1Q9Y3B2 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
EXOSC1Q9Y3B2 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
EXOSC1Q9Y3B2 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
EXOSC1Q9Y3B2 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.67■□□□□ 0.58
EXOSC1Q9Y3B2 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
EXOSC1Q9Y3B2 AC239859.2-201ENST00000444165 318 ntBASIC18.67■□□□□ 0.58
EXOSC1Q9Y3B2 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC18.67■□□□□ 0.58
EXOSC1Q9Y3B2 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC18.67■□□□□ 0.58
EXOSC1Q9Y3B2 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC18.67■□□□□ 0.58
EXOSC1Q9Y3B2 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
EXOSC1Q9Y3B2 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
EXOSC1Q9Y3B2 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
EXOSC1Q9Y3B2 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
EXOSC1Q9Y3B2 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
EXOSC1Q9Y3B2 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC18.67■□□□□ 0.58
EXOSC1Q9Y3B2 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.67■□□□□ 0.58
EXOSC1Q9Y3B2 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.67■□□□□ 0.58
EXOSC1Q9Y3B2 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.67■□□□□ 0.58
EXOSC1Q9Y3B2 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.67■□□□□ 0.58
EXOSC1Q9Y3B2 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.66■□□□□ 0.58
EXOSC1Q9Y3B2 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
EXOSC1Q9Y3B2 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.66■□□□□ 0.58
EXOSC1Q9Y3B2 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
EXOSC1Q9Y3B2 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC18.66■□□□□ 0.58
EXOSC1Q9Y3B2 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
EXOSC1Q9Y3B2 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
EXOSC1Q9Y3B2 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
EXOSC1Q9Y3B2 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
EXOSC1Q9Y3B2 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
EXOSC1Q9Y3B2 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC18.66■□□□□ 0.58
EXOSC1Q9Y3B2 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
EXOSC1Q9Y3B2 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC18.66■□□□□ 0.58
EXOSC1Q9Y3B2 AC010525.1-201ENST00000585559 441 ntBASIC18.66■□□□□ 0.58
EXOSC1Q9Y3B2 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.66■□□□□ 0.58
EXOSC1Q9Y3B2 AL391422.3-201ENST00000603791 2761 ntBASIC18.66■□□□□ 0.58
EXOSC1Q9Y3B2 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
EXOSC1Q9Y3B2 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.66■□□□□ 0.58
EXOSC1Q9Y3B2 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC18.66■□□□□ 0.58
EXOSC1Q9Y3B2 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC18.66■□□□□ 0.58
EXOSC1Q9Y3B2 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
EXOSC1Q9Y3B2 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
EXOSC1Q9Y3B2 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
EXOSC1Q9Y3B2 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC18.65■□□□□ 0.58
EXOSC1Q9Y3B2 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
EXOSC1Q9Y3B2 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
EXOSC1Q9Y3B2 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
EXOSC1Q9Y3B2 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
EXOSC1Q9Y3B2 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
EXOSC1Q9Y3B2 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.65■□□□□ 0.58
EXOSC1Q9Y3B2 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
EXOSC1Q9Y3B2 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
EXOSC1Q9Y3B2 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
EXOSC1Q9Y3B2 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC18.65■□□□□ 0.58
EXOSC1Q9Y3B2 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC18.65■□□□□ 0.58
EXOSC1Q9Y3B2 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC18.65■□□□□ 0.58
EXOSC1Q9Y3B2 AK3-203ENST00000447596 705 ntTSL 2 BASIC18.65■□□□□ 0.58
EXOSC1Q9Y3B2 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC18.65■□□□□ 0.58
EXOSC1Q9Y3B2 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC18.65■□□□□ 0.58
EXOSC1Q9Y3B2 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC18.65■□□□□ 0.58
EXOSC1Q9Y3B2 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
EXOSC1Q9Y3B2 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
EXOSC1Q9Y3B2 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
EXOSC1Q9Y3B2 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
EXOSC1Q9Y3B2 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
EXOSC1Q9Y3B2 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.65■□□□□ 0.58
EXOSC1Q9Y3B2 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
EXOSC1Q9Y3B2 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
EXOSC1Q9Y3B2 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
EXOSC1Q9Y3B2 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
EXOSC1Q9Y3B2 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.64■□□□□ 0.58
EXOSC1Q9Y3B2 AFG3L1P-217ENST00000557444 2447 ntBASIC18.64■□□□□ 0.58
EXOSC1Q9Y3B2 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
EXOSC1Q9Y3B2 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
EXOSC1Q9Y3B2 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
EXOSC1Q9Y3B2 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
EXOSC1Q9Y3B2 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
EXOSC1Q9Y3B2 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.64■□□□□ 0.57
EXOSC1Q9Y3B2 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
EXOSC1Q9Y3B2 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
EXOSC1Q9Y3B2 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
EXOSC1Q9Y3B2 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
EXOSC1Q9Y3B2 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
EXOSC1Q9Y3B2 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms