Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.62■□□□□ 0.57
CLCF1Q9UBD9 AC016405.3-201ENST00000607710 860 ntBASIC18.62■□□□□ 0.57
CLCF1Q9UBD9 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLCF1Q9UBD9 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
CLCF1Q9UBD9 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CLCF1Q9UBD9 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC18.62■□□□□ 0.57
CLCF1Q9UBD9 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
CLCF1Q9UBD9 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLCF1Q9UBD9 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
CLCF1Q9UBD9 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CLCF1Q9UBD9 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CLCF1Q9UBD9 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC18.62■□□□□ 0.57
CLCF1Q9UBD9 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLCF1Q9UBD9 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLCF1Q9UBD9 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CLCF1Q9UBD9 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLCF1Q9UBD9 LSR-203ENST00000360798 1963 ntTSL 2 BASIC18.61■□□□□ 0.57
CLCF1Q9UBD9 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CLCF1Q9UBD9 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC18.61■□□□□ 0.57
CLCF1Q9UBD9 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CLCF1Q9UBD9 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC18.61■□□□□ 0.57
CLCF1Q9UBD9 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLCF1Q9UBD9 AL512625.2-201ENST00000417533 625 ntBASIC18.61■□□□□ 0.57
CLCF1Q9UBD9 AC093787.1-201ENST00000450396 207 ntBASIC18.61■□□□□ 0.57
CLCF1Q9UBD9 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC18.61■□□□□ 0.57
CLCF1Q9UBD9 MARS-234ENST00000630571 216 ntTSL 5 BASIC18.61■□□□□ 0.57
CLCF1Q9UBD9 MARS-235ENST00000630803 183 ntTSL 3 BASIC18.61■□□□□ 0.57
CLCF1Q9UBD9 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLCF1Q9UBD9 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CLCF1Q9UBD9 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC18.61■□□□□ 0.57
CLCF1Q9UBD9 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLCF1Q9UBD9 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLCF1Q9UBD9 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLCF1Q9UBD9 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CLCF1Q9UBD9 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC18.6■□□□□ 0.57
CLCF1Q9UBD9 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CLCF1Q9UBD9 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CLCF1Q9UBD9 AC091799.1-201ENST00000422823 811 ntBASIC18.6■□□□□ 0.57
CLCF1Q9UBD9 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.6■□□□□ 0.57
CLCF1Q9UBD9 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CLCF1Q9UBD9 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC18.6■□□□□ 0.57
CLCF1Q9UBD9 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC18.6■□□□□ 0.57
CLCF1Q9UBD9 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC18.6■□□□□ 0.57
CLCF1Q9UBD9 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CLCF1Q9UBD9 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLCF1Q9UBD9 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLCF1Q9UBD9 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLCF1Q9UBD9 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC18.6■□□□□ 0.57
CLCF1Q9UBD9 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC18.6■□□□□ 0.57
CLCF1Q9UBD9 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CLCF1Q9UBD9 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLCF1Q9UBD9 MKRN4P-201ENST00000444706 1521 ntBASIC18.59■□□□□ 0.57
CLCF1Q9UBD9 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
CLCF1Q9UBD9 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLCF1Q9UBD9 AC069152.1-201ENST00000438030 544 ntBASIC18.59■□□□□ 0.57
CLCF1Q9UBD9 PBX1-209ENST00000485769 834 ntTSL 2 BASIC18.59■□□□□ 0.57
CLCF1Q9UBD9 RARRES2P4-201ENST00000514074 484 ntBASIC18.59■□□□□ 0.57
CLCF1Q9UBD9 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC18.59■□□□□ 0.57
CLCF1Q9UBD9 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18.59■□□□□ 0.57
CLCF1Q9UBD9 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC18.59■□□□□ 0.57
CLCF1Q9UBD9 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
CLCF1Q9UBD9 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLCF1Q9UBD9 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLCF1Q9UBD9 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLCF1Q9UBD9 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLCF1Q9UBD9 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLCF1Q9UBD9 AC012676.1-201ENST00000574705 1949 ntBASIC18.59■□□□□ 0.57
CLCF1Q9UBD9 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CLCF1Q9UBD9 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
CLCF1Q9UBD9 ME2-206ENST00000638410 2289 ntTSL 5 BASIC18.58■□□□□ 0.57
CLCF1Q9UBD9 ME2-210ENST00000639255 2262 ntTSL 5 BASIC18.58■□□□□ 0.57
CLCF1Q9UBD9 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
CLCF1Q9UBD9 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CLCF1Q9UBD9 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLCF1Q9UBD9 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CLCF1Q9UBD9 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
CLCF1Q9UBD9 AC073210.2-201ENST00000430369 194 ntBASIC18.58■□□□□ 0.56
CLCF1Q9UBD9 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CLCF1Q9UBD9 PHB2-213ENST00000546111 858 ntTSL 2 BASIC18.58■□□□□ 0.56
CLCF1Q9UBD9 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.58■□□□□ 0.56
CLCF1Q9UBD9 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC18.58■□□□□ 0.56
CLCF1Q9UBD9 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC18.58■□□□□ 0.56
CLCF1Q9UBD9 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLCF1Q9UBD9 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC18.58■□□□□ 0.56
CLCF1Q9UBD9 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CLCF1Q9UBD9 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CLCF1Q9UBD9 MIPEPP3-201ENST00000412105 444 ntBASIC18.57■□□□□ 0.56
CLCF1Q9UBD9 AC098934.4-201ENST00000564127 592 ntBASIC18.57■□□□□ 0.56
CLCF1Q9UBD9 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC18.57■□□□□ 0.56
CLCF1Q9UBD9 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC18.57■□□□□ 0.56
CLCF1Q9UBD9 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLCF1Q9UBD9 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CLCF1Q9UBD9 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CLCF1Q9UBD9 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLCF1Q9UBD9 MFF-203ENST00000349901 1716 ntTSL 2 BASIC18.57■□□□□ 0.56
CLCF1Q9UBD9 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLCF1Q9UBD9 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLCF1Q9UBD9 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CLCF1Q9UBD9 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLCF1Q9UBD9 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms