Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LRFN1Q9P244 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LRFN1Q9P244 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.2■□□□□ 0.66
LRFN1Q9P244 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LRFN1Q9P244 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LRFN1Q9P244 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC19.2■□□□□ 0.66
LRFN1Q9P244 RGMA-211ENST00000557420 989 ntTSL 3 BASIC19.2■□□□□ 0.66
LRFN1Q9P244 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LRFN1Q9P244 AC016405.3-201ENST00000607710 860 ntBASIC19.2■□□□□ 0.66
LRFN1Q9P244 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LRFN1Q9P244 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
LRFN1Q9P244 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LRFN1Q9P244 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LRFN1Q9P244 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LRFN1Q9P244 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
LRFN1Q9P244 C11orf96-202ENST00000528572 1834 ntBASIC19.19■□□□□ 0.66
LRFN1Q9P244 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LRFN1Q9P244 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LRFN1Q9P244 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
LRFN1Q9P244 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
LRFN1Q9P244 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LRFN1Q9P244 AL512625.2-201ENST00000417533 625 ntBASIC19.19■□□□□ 0.66
LRFN1Q9P244 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.19■□□□□ 0.66
LRFN1Q9P244 AL162412.1-201ENST00000567129 965 ntBASIC19.19■□□□□ 0.66
LRFN1Q9P244 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.19■□□□□ 0.66
LRFN1Q9P244 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
LRFN1Q9P244 AC133041.1-202ENST00000642053 222 ntBASIC19.19■□□□□ 0.66
LRFN1Q9P244 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LRFN1Q9P244 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LRFN1Q9P244 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.19■□□□□ 0.66
LRFN1Q9P244 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LRFN1Q9P244 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
LRFN1Q9P244 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LRFN1Q9P244 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LRFN1Q9P244 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LRFN1Q9P244 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LRFN1Q9P244 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
LRFN1Q9P244 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LRFN1Q9P244 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LRFN1Q9P244 AC069152.1-201ENST00000438030 544 ntBASIC19.18■□□□□ 0.66
LRFN1Q9P244 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LRFN1Q9P244 AC093787.1-201ENST00000450396 207 ntBASIC19.18■□□□□ 0.66
LRFN1Q9P244 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.18■□□□□ 0.66
LRFN1Q9P244 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
LRFN1Q9P244 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.18■□□□□ 0.66
LRFN1Q9P244 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.18■□□□□ 0.66
LRFN1Q9P244 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LRFN1Q9P244 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LRFN1Q9P244 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LRFN1Q9P244 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LRFN1Q9P244 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LRFN1Q9P244 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LRFN1Q9P244 AC068473.5-201ENST00000616428 2072 ntBASIC19.18■□□□□ 0.66
LRFN1Q9P244 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
LRFN1Q9P244 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LRFN1Q9P244 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
LRFN1Q9P244 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.17■□□□□ 0.66
LRFN1Q9P244 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
LRFN1Q9P244 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
LRFN1Q9P244 AC245052.3-201ENST00000450182 901 ntBASIC19.17■□□□□ 0.66
LRFN1Q9P244 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.17■□□□□ 0.66
LRFN1Q9P244 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.17■□□□□ 0.66
LRFN1Q9P244 MIR4758-201ENST00000577688 71 ntBASIC19.17■□□□□ 0.66
LRFN1Q9P244 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.17■□□□□ 0.66
LRFN1Q9P244 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LRFN1Q9P244 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.16■□□□□ 0.66
LRFN1Q9P244 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.16■□□□□ 0.66
LRFN1Q9P244 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
LRFN1Q9P244 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
LRFN1Q9P244 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LRFN1Q9P244 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LRFN1Q9P244 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LRFN1Q9P244 MIPEPP3-201ENST00000412105 444 ntBASIC19.16■□□□□ 0.66
LRFN1Q9P244 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LRFN1Q9P244 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
LRFN1Q9P244 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.16■□□□□ 0.66
LRFN1Q9P244 CD99P1-205ENST00000527459 561 ntBASIC19.16■□□□□ 0.66
LRFN1Q9P244 KLF13-207ENST00000560473 489 ntTSL 3 BASIC19.16■□□□□ 0.66
LRFN1Q9P244 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC19.16■□□□□ 0.66
LRFN1Q9P244 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.16■□□□□ 0.66
LRFN1Q9P244 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.16■□□□□ 0.66
LRFN1Q9P244 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
LRFN1Q9P244 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LRFN1Q9P244 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.16■□□□□ 0.66
LRFN1Q9P244 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
LRFN1Q9P244 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LRFN1Q9P244 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.15■□□□□ 0.66
LRFN1Q9P244 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRFN1Q9P244 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LRFN1Q9P244 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LRFN1Q9P244 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.15■□□□□ 0.66
LRFN1Q9P244 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC19.15■□□□□ 0.66
LRFN1Q9P244 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRFN1Q9P244 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.15■□□□□ 0.66
LRFN1Q9P244 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LRFN1Q9P244 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC19.15■□□□□ 0.66
LRFN1Q9P244 AC073210.2-201ENST00000430369 194 ntBASIC19.15■□□□□ 0.66
LRFN1Q9P244 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRFN1Q9P244 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC19.15■□□□□ 0.66
LRFN1Q9P244 KRT18P6-201ENST00000555540 1265 ntBASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms