Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MKS1Q9NXB0 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.67■□□□□ 0.9
MKS1Q9NXB0 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MKS1Q9NXB0 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
MKS1Q9NXB0 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MKS1Q9NXB0 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
MKS1Q9NXB0 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.66■□□□□ 0.9
MKS1Q9NXB0 AC007952.6-201ENST00000573168 2673 ntBASIC20.66■□□□□ 0.9
MKS1Q9NXB0 AC003957.1-201ENST00000625108 2673 ntBASIC20.66■□□□□ 0.9
MKS1Q9NXB0 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
MKS1Q9NXB0 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.66■□□□□ 0.9
MKS1Q9NXB0 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
MKS1Q9NXB0 MIR4466-201ENST00000606121 54 ntBASIC20.66■□□□□ 0.9
MKS1Q9NXB0 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
MKS1Q9NXB0 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MKS1Q9NXB0 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
MKS1Q9NXB0 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MKS1Q9NXB0 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.66■□□□□ 0.9
MKS1Q9NXB0 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
MKS1Q9NXB0 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
MKS1Q9NXB0 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
MKS1Q9NXB0 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MKS1Q9NXB0 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
MKS1Q9NXB0 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.65■□□□□ 0.9
MKS1Q9NXB0 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MKS1Q9NXB0 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MKS1Q9NXB0 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC20.65■□□□□ 0.9
MKS1Q9NXB0 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.65■□□□□ 0.9
MKS1Q9NXB0 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.65■□□□□ 0.9
MKS1Q9NXB0 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
MKS1Q9NXB0 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.65■□□□□ 0.9
MKS1Q9NXB0 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
MKS1Q9NXB0 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
MKS1Q9NXB0 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.9
MKS1Q9NXB0 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
MKS1Q9NXB0 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.64■□□□□ 0.9
MKS1Q9NXB0 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.64■□□□□ 0.9
MKS1Q9NXB0 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
MKS1Q9NXB0 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
MKS1Q9NXB0 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
MKS1Q9NXB0 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.64■□□□□ 0.89
MKS1Q9NXB0 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.64■□□□□ 0.89
MKS1Q9NXB0 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MKS1Q9NXB0 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.64■□□□□ 0.89
MKS1Q9NXB0 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
MKS1Q9NXB0 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.64■□□□□ 0.89
MKS1Q9NXB0 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MKS1Q9NXB0 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MKS1Q9NXB0 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.64■□□□□ 0.89
MKS1Q9NXB0 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.64■□□□□ 0.89
MKS1Q9NXB0 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
MKS1Q9NXB0 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
MKS1Q9NXB0 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.63■□□□□ 0.89
MKS1Q9NXB0 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MKS1Q9NXB0 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MKS1Q9NXB0 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
MKS1Q9NXB0 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.63■□□□□ 0.89
MKS1Q9NXB0 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20.63■□□□□ 0.89
MKS1Q9NXB0 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
MKS1Q9NXB0 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MKS1Q9NXB0 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
MKS1Q9NXB0 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.63■□□□□ 0.89
MKS1Q9NXB0 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MKS1Q9NXB0 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
MKS1Q9NXB0 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.63■□□□□ 0.89
MKS1Q9NXB0 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.63■□□□□ 0.89
MKS1Q9NXB0 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.63■□□□□ 0.89
MKS1Q9NXB0 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
MKS1Q9NXB0 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
MKS1Q9NXB0 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
MKS1Q9NXB0 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
MKS1Q9NXB0 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MKS1Q9NXB0 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
MKS1Q9NXB0 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.62■□□□□ 0.89
MKS1Q9NXB0 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MKS1Q9NXB0 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MKS1Q9NXB0 AL512408.1-201ENST00000569378 2000 ntBASIC20.62■□□□□ 0.89
MKS1Q9NXB0 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MKS1Q9NXB0 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
MKS1Q9NXB0 BX842568.3-201ENST00000418104 571 ntBASIC20.62■□□□□ 0.89
MKS1Q9NXB0 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
MKS1Q9NXB0 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.62■□□□□ 0.89
MKS1Q9NXB0 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.62■□□□□ 0.89
MKS1Q9NXB0 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
MKS1Q9NXB0 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
MKS1Q9NXB0 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
MKS1Q9NXB0 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.62■□□□□ 0.89
MKS1Q9NXB0 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.62■□□□□ 0.89
MKS1Q9NXB0 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
MKS1Q9NXB0 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
MKS1Q9NXB0 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.62■□□□□ 0.89
MKS1Q9NXB0 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.62■□□□□ 0.89
MKS1Q9NXB0 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
MKS1Q9NXB0 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
MKS1Q9NXB0 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MKS1Q9NXB0 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MKS1Q9NXB0 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
MKS1Q9NXB0 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
MKS1Q9NXB0 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
MKS1Q9NXB0 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms