Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 ME3-201ENST00000323418 1068 ntTSL 5 BASIC22.34■■□□□ 1.17
CISHQ9NSE2 HSCB-202ENST00000398941 955 ntTSL 2 BASIC22.34■■□□□ 1.17
CISHQ9NSE2 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC22.34■■□□□ 1.17
CISHQ9NSE2 PARL-206ENST00000435888 1098 ntTSL 5 BASIC22.34■■□□□ 1.17
CISHQ9NSE2 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC22.34■■□□□ 1.17
CISHQ9NSE2 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC22.34■■□□□ 1.17
CISHQ9NSE2 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC22.34■■□□□ 1.17
CISHQ9NSE2 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CISHQ9NSE2 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
CISHQ9NSE2 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CISHQ9NSE2 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CISHQ9NSE2 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC22.33■■□□□ 1.17
CISHQ9NSE2 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC22.33■■□□□ 1.17
CISHQ9NSE2 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CISHQ9NSE2 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CISHQ9NSE2 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CISHQ9NSE2 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC22.33■■□□□ 1.17
CISHQ9NSE2 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC22.33■■□□□ 1.17
CISHQ9NSE2 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
CISHQ9NSE2 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CISHQ9NSE2 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
CISHQ9NSE2 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC22.32■■□□□ 1.16
CISHQ9NSE2 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CISHQ9NSE2 PARP1-202ENST00000366792 553 ntTSL 3 BASIC22.32■■□□□ 1.16
CISHQ9NSE2 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC22.32■■□□□ 1.16
CISHQ9NSE2 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
CISHQ9NSE2 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC22.32■■□□□ 1.16
CISHQ9NSE2 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
CISHQ9NSE2 AC006015.1-201ENST00000429970 570 ntBASIC22.32■■□□□ 1.16
CISHQ9NSE2 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC22.32■■□□□ 1.16
CISHQ9NSE2 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC22.32■■□□□ 1.16
CISHQ9NSE2 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CISHQ9NSE2 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC22.32■■□□□ 1.16
CISHQ9NSE2 SLC7A5P1-201ENST00000568957 537 ntBASIC22.32■■□□□ 1.16
CISHQ9NSE2 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CISHQ9NSE2 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC22.32■■□□□ 1.16
CISHQ9NSE2 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC22.32■■□□□ 1.16
CISHQ9NSE2 MYCNOS-205ENST00000641950 531 ntBASIC22.32■■□□□ 1.16
CISHQ9NSE2 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CISHQ9NSE2 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
CISHQ9NSE2 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CISHQ9NSE2 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CISHQ9NSE2 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CISHQ9NSE2 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
CISHQ9NSE2 AL049796.1-201ENST00000565336 1766 ntBASIC22.31■■□□□ 1.16
CISHQ9NSE2 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CISHQ9NSE2 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CISHQ9NSE2 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CISHQ9NSE2 AC016769.1-201ENST00000409132 1010 ntBASIC22.31■■□□□ 1.16
CISHQ9NSE2 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CISHQ9NSE2 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC22.31■■□□□ 1.16
CISHQ9NSE2 SPI1-203ENST00000533030 661 ntTSL 2 BASIC22.31■■□□□ 1.16
CISHQ9NSE2 WWOX-218ENST00000627394 894 ntTSL 5 BASIC22.31■■□□□ 1.16
CISHQ9NSE2 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CISHQ9NSE2 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
CISHQ9NSE2 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC22.31■■□□□ 1.16
CISHQ9NSE2 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
CISHQ9NSE2 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
CISHQ9NSE2 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
CISHQ9NSE2 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC22.3■■□□□ 1.16
CISHQ9NSE2 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC22.3■■□□□ 1.16
CISHQ9NSE2 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CISHQ9NSE2 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
CISHQ9NSE2 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CISHQ9NSE2 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CISHQ9NSE2 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC22.3■■□□□ 1.16
CISHQ9NSE2 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CISHQ9NSE2 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC22.3■■□□□ 1.16
CISHQ9NSE2 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CISHQ9NSE2 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC22.3■■□□□ 1.16
CISHQ9NSE2 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
CISHQ9NSE2 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC22.29■■□□□ 1.16
CISHQ9NSE2 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC22.29■■□□□ 1.16
CISHQ9NSE2 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
CISHQ9NSE2 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC22.29■■□□□ 1.16
CISHQ9NSE2 KRT18P11-201ENST00000435214 1283 ntBASIC22.29■■□□□ 1.16
CISHQ9NSE2 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC22.29■■□□□ 1.16
CISHQ9NSE2 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC22.29■■□□□ 1.16
CISHQ9NSE2 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
CISHQ9NSE2 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CISHQ9NSE2 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CISHQ9NSE2 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CISHQ9NSE2 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC22.28■■□□□ 1.16
CISHQ9NSE2 GLI3-203ENST00000437480 451 ntTSL 2 BASIC22.28■■□□□ 1.16
CISHQ9NSE2 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
CISHQ9NSE2 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC22.28■■□□□ 1.16
CISHQ9NSE2 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC22.28■■□□□ 1.16
CISHQ9NSE2 IKBKGP1-201ENST00000612193 1073 ntBASIC22.28■■□□□ 1.16
CISHQ9NSE2 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CISHQ9NSE2 RARRES2P11-201ENST00000635158 484 ntBASIC22.28■■□□□ 1.16
CISHQ9NSE2 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CISHQ9NSE2 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC22.28■■□□□ 1.16
CISHQ9NSE2 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
CISHQ9NSE2 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CISHQ9NSE2 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CISHQ9NSE2 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC22.27■■□□□ 1.16
CISHQ9NSE2 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC22.27■■□□□ 1.16
CISHQ9NSE2 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CISHQ9NSE2 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
CISHQ9NSE2 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC22.27■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms