Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
UBQLN3Q9H347 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
UBQLN3Q9H347 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
UBQLN3Q9H347 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
UBQLN3Q9H347 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
UBQLN3Q9H347 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
UBQLN3Q9H347 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
UBQLN3Q9H347 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC19.34■□□□□ 0.69
UBQLN3Q9H347 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
UBQLN3Q9H347 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
UBQLN3Q9H347 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.34■□□□□ 0.69
UBQLN3Q9H347 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.34■□□□□ 0.69
UBQLN3Q9H347 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC19.34■□□□□ 0.69
UBQLN3Q9H347 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
UBQLN3Q9H347 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
UBQLN3Q9H347 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.33■□□□□ 0.69
UBQLN3Q9H347 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
UBQLN3Q9H347 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
UBQLN3Q9H347 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
UBQLN3Q9H347 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.33■□□□□ 0.69
UBQLN3Q9H347 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.33■□□□□ 0.69
UBQLN3Q9H347 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
UBQLN3Q9H347 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.33■□□□□ 0.69
UBQLN3Q9H347 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.33■□□□□ 0.69
UBQLN3Q9H347 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
UBQLN3Q9H347 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
UBQLN3Q9H347 AC016769.1-201ENST00000409132 1010 ntBASIC19.33■□□□□ 0.68
UBQLN3Q9H347 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
UBQLN3Q9H347 DLX3-202ENST00000512495 834 ntTSL 2 BASIC19.33■□□□□ 0.68
UBQLN3Q9H347 EEF1DP3-203ENST00000566025 782 ntBASIC19.33■□□□□ 0.68
UBQLN3Q9H347 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
UBQLN3Q9H347 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.33■□□□□ 0.68
UBQLN3Q9H347 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
UBQLN3Q9H347 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
UBQLN3Q9H347 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
UBQLN3Q9H347 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
UBQLN3Q9H347 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
UBQLN3Q9H347 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
UBQLN3Q9H347 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
UBQLN3Q9H347 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC19.32■□□□□ 0.68
UBQLN3Q9H347 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.32■□□□□ 0.68
UBQLN3Q9H347 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
UBQLN3Q9H347 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
UBQLN3Q9H347 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
UBQLN3Q9H347 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
UBQLN3Q9H347 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
UBQLN3Q9H347 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
UBQLN3Q9H347 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.32■□□□□ 0.68
UBQLN3Q9H347 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.32■□□□□ 0.68
UBQLN3Q9H347 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.32■□□□□ 0.68
UBQLN3Q9H347 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.32■□□□□ 0.68
UBQLN3Q9H347 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
UBQLN3Q9H347 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.32■□□□□ 0.68
UBQLN3Q9H347 RARRES2P11-201ENST00000635158 484 ntBASIC19.32■□□□□ 0.68
UBQLN3Q9H347 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
UBQLN3Q9H347 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
UBQLN3Q9H347 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
UBQLN3Q9H347 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
UBQLN3Q9H347 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
UBQLN3Q9H347 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.32■□□□□ 0.68
UBQLN3Q9H347 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
UBQLN3Q9H347 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.32■□□□□ 0.68
UBQLN3Q9H347 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
UBQLN3Q9H347 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
UBQLN3Q9H347 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.31■□□□□ 0.68
UBQLN3Q9H347 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
UBQLN3Q9H347 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC19.31■□□□□ 0.68
UBQLN3Q9H347 AC138907.5-202ENST00000569484 235 ntBASIC19.31■□□□□ 0.68
UBQLN3Q9H347 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.31■□□□□ 0.68
UBQLN3Q9H347 VPS53-216ENST00000574029 585 ntTSL 4 BASIC19.31■□□□□ 0.68
UBQLN3Q9H347 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
UBQLN3Q9H347 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
UBQLN3Q9H347 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
UBQLN3Q9H347 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
UBQLN3Q9H347 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
UBQLN3Q9H347 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
UBQLN3Q9H347 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
UBQLN3Q9H347 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
UBQLN3Q9H347 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
UBQLN3Q9H347 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
UBQLN3Q9H347 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
UBQLN3Q9H347 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.3■□□□□ 0.68
UBQLN3Q9H347 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
UBQLN3Q9H347 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
UBQLN3Q9H347 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
UBQLN3Q9H347 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
UBQLN3Q9H347 KRT18P11-201ENST00000435214 1283 ntBASIC19.3■□□□□ 0.68
UBQLN3Q9H347 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
UBQLN3Q9H347 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.3■□□□□ 0.68
UBQLN3Q9H347 AC053503.5-201ENST00000601508 636 ntBASIC19.3■□□□□ 0.68
UBQLN3Q9H347 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
UBQLN3Q9H347 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
UBQLN3Q9H347 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
UBQLN3Q9H347 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
UBQLN3Q9H347 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
UBQLN3Q9H347 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
UBQLN3Q9H347 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
UBQLN3Q9H347 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.29■□□□□ 0.68
UBQLN3Q9H347 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
UBQLN3Q9H347 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms