Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM4Q9C037 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
TRIM4Q9C037 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM4Q9C037 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.67■□□□□ 0.9
TRIM4Q9C037 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM4Q9C037 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.67■□□□□ 0.9
TRIM4Q9C037 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
TRIM4Q9C037 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
TRIM4Q9C037 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.67■□□□□ 0.9
TRIM4Q9C037 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC20.67■□□□□ 0.9
TRIM4Q9C037 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.67■□□□□ 0.9
TRIM4Q9C037 KRT18P14-201ENST00000534205 1250 ntBASIC20.67■□□□□ 0.9
TRIM4Q9C037 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM4Q9C037 AC104771.1-201ENST00000603335 964 ntBASIC20.67■□□□□ 0.9
TRIM4Q9C037 AL499627.2-201ENST00000606283 725 ntBASIC20.67■□□□□ 0.9
TRIM4Q9C037 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM4Q9C037 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM4Q9C037 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM4Q9C037 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM4Q9C037 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM4Q9C037 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.67■□□□□ 0.9
TRIM4Q9C037 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.67■□□□□ 0.9
TRIM4Q9C037 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.67■□□□□ 0.9
TRIM4Q9C037 LINC01960-201ENST00000563759 1884 ntBASIC20.67■□□□□ 0.9
TRIM4Q9C037 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM4Q9C037 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM4Q9C037 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM4Q9C037 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM4Q9C037 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.66■□□□□ 0.9
TRIM4Q9C037 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM4Q9C037 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.66■□□□□ 0.9
TRIM4Q9C037 MIR3181-201ENST00000578512 73 ntBASIC20.66■□□□□ 0.9
TRIM4Q9C037 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.66■□□□□ 0.9
TRIM4Q9C037 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM4Q9C037 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
TRIM4Q9C037 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.66■□□□□ 0.9
TRIM4Q9C037 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM4Q9C037 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
TRIM4Q9C037 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM4Q9C037 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM4Q9C037 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM4Q9C037 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM4Q9C037 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
TRIM4Q9C037 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
TRIM4Q9C037 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM4Q9C037 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM4Q9C037 AC092053.2-201ENST00000640557 1818 ntBASIC20.65■□□□□ 0.9
TRIM4Q9C037 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM4Q9C037 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM4Q9C037 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.65■□□□□ 0.9
TRIM4Q9C037 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM4Q9C037 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
TRIM4Q9C037 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM4Q9C037 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC20.65■□□□□ 0.9
TRIM4Q9C037 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
TRIM4Q9C037 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
TRIM4Q9C037 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
TRIM4Q9C037 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM4Q9C037 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM4Q9C037 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM4Q9C037 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM4Q9C037 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
TRIM4Q9C037 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.64■□□□□ 0.9
TRIM4Q9C037 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC20.64■□□□□ 0.9
TRIM4Q9C037 AL157384.1-201ENST00000445995 2473 ntBASIC20.64■□□□□ 0.9
TRIM4Q9C037 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.64■□□□□ 0.89
TRIM4Q9C037 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM4Q9C037 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM4Q9C037 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC20.64■□□□□ 0.89
TRIM4Q9C037 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
TRIM4Q9C037 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM4Q9C037 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
TRIM4Q9C037 AC005229.4-201ENST00000610085 2198 ntBASIC20.64■□□□□ 0.89
TRIM4Q9C037 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.64■□□□□ 0.89
TRIM4Q9C037 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM4Q9C037 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
TRIM4Q9C037 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM4Q9C037 AC012414.1-201ENST00000556676 535 ntBASIC20.64■□□□□ 0.89
TRIM4Q9C037 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM4Q9C037 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM4Q9C037 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM4Q9C037 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM4Q9C037 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM4Q9C037 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
TRIM4Q9C037 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.63■□□□□ 0.89
TRIM4Q9C037 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.63■□□□□ 0.89
TRIM4Q9C037 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM4Q9C037 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
TRIM4Q9C037 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM4Q9C037 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM4Q9C037 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.63■□□□□ 0.89
TRIM4Q9C037 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM4Q9C037 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.63■□□□□ 0.89
TRIM4Q9C037 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM4Q9C037 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM4Q9C037 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM4Q9C037 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM4Q9C037 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.63■□□□□ 0.89
TRIM4Q9C037 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
TRIM4Q9C037 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms