Protein–RNA interactions for Protein: Q9BTN0

LRFN3, Leucine-rich repeat and fibronectin type-III domain-containing protein 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN3Q9BTN0 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRFN3Q9BTN0 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
LRFN3Q9BTN0 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LRFN3Q9BTN0 AC135731.1-201ENST00000569415 2548 ntBASIC21.18■□□□□ 0.98
LRFN3Q9BTN0 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC21.18■□□□□ 0.98
LRFN3Q9BTN0 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LRFN3Q9BTN0 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRFN3Q9BTN0 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRFN3Q9BTN0 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
LRFN3Q9BTN0 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC21.18■□□□□ 0.98
LRFN3Q9BTN0 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LRFN3Q9BTN0 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC21.18■□□□□ 0.98
LRFN3Q9BTN0 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
LRFN3Q9BTN0 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LRFN3Q9BTN0 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRFN3Q9BTN0 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRFN3Q9BTN0 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRFN3Q9BTN0 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LRFN3Q9BTN0 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LRFN3Q9BTN0 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC21.18■□□□□ 0.98
LRFN3Q9BTN0 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRFN3Q9BTN0 GGT1-206ENST00000404223 952 ntTSL 2 BASIC21.17■□□□□ 0.98
LRFN3Q9BTN0 CRYGFP-201ENST00000418459 633 ntBASIC21.17■□□□□ 0.98
LRFN3Q9BTN0 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRFN3Q9BTN0 AL450487.1-201ENST00000426799 995 ntBASIC21.17■□□□□ 0.98
LRFN3Q9BTN0 DUSP5P1-201ENST00000441325 1139 ntBASIC21.17■□□□□ 0.98
LRFN3Q9BTN0 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LRFN3Q9BTN0 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC21.17■□□□□ 0.98
LRFN3Q9BTN0 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC21.17■□□□□ 0.98
LRFN3Q9BTN0 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LRFN3Q9BTN0 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC21.17■□□□□ 0.98
LRFN3Q9BTN0 NXN-202ENST00000537628 1340 ntTSL 3 BASIC21.17■□□□□ 0.98
LRFN3Q9BTN0 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LRFN3Q9BTN0 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC21.17■□□□□ 0.98
LRFN3Q9BTN0 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LRFN3Q9BTN0 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRFN3Q9BTN0 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRFN3Q9BTN0 AC142086.6-201ENST00000621154 1765 ntBASIC21.17■□□□□ 0.98
LRFN3Q9BTN0 AL353803.4-201ENST00000565882 1934 ntBASIC21.17■□□□□ 0.98
LRFN3Q9BTN0 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LRFN3Q9BTN0 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRFN3Q9BTN0 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LRFN3Q9BTN0 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
LRFN3Q9BTN0 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRFN3Q9BTN0 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LRFN3Q9BTN0 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRFN3Q9BTN0 KRT18P68-201ENST00000392293 1000 ntBASIC21.16■□□□□ 0.98
LRFN3Q9BTN0 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC21.16■□□□□ 0.98
LRFN3Q9BTN0 SLC25A3P1-201ENST00000443844 931 ntBASIC21.16■□□□□ 0.98
LRFN3Q9BTN0 RBM17P1-201ENST00000453646 1190 ntBASIC21.16■□□□□ 0.98
LRFN3Q9BTN0 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC21.16■□□□□ 0.98
LRFN3Q9BTN0 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
LRFN3Q9BTN0 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
LRFN3Q9BTN0 LTBR-211ENST00000543190 785 ntTSL 3 BASIC21.16■□□□□ 0.98
LRFN3Q9BTN0 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LRFN3Q9BTN0 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.15■□□□□ 0.98
LRFN3Q9BTN0 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRFN3Q9BTN0 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.15■□□□□ 0.98
LRFN3Q9BTN0 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRFN3Q9BTN0 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC21.15■□□□□ 0.98
LRFN3Q9BTN0 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC21.15■□□□□ 0.98
LRFN3Q9BTN0 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.15■□□□□ 0.98
LRFN3Q9BTN0 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
LRFN3Q9BTN0 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRFN3Q9BTN0 PKM-203ENST00000389093 2279 ntTSL 5 BASIC21.15■□□□□ 0.98
LRFN3Q9BTN0 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRFN3Q9BTN0 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRFN3Q9BTN0 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRFN3Q9BTN0 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRFN3Q9BTN0 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
LRFN3Q9BTN0 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRFN3Q9BTN0 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LRFN3Q9BTN0 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LRFN3Q9BTN0 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC21.15■□□□□ 0.98
LRFN3Q9BTN0 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC21.15■□□□□ 0.98
LRFN3Q9BTN0 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRFN3Q9BTN0 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LRFN3Q9BTN0 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRFN3Q9BTN0 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRFN3Q9BTN0 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRFN3Q9BTN0 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRFN3Q9BTN0 AC079598.2-202ENST00000546624 1451 ntBASIC21.14■□□□□ 0.98
LRFN3Q9BTN0 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
LRFN3Q9BTN0 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC21.14■□□□□ 0.97
LRFN3Q9BTN0 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
LRFN3Q9BTN0 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC21.14■□□□□ 0.97
LRFN3Q9BTN0 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC21.14■□□□□ 0.97
LRFN3Q9BTN0 GPALPP1-207ENST00000611650 899 ntBASIC21.14■□□□□ 0.97
LRFN3Q9BTN0 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
LRFN3Q9BTN0 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC21.14■□□□□ 0.97
LRFN3Q9BTN0 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
LRFN3Q9BTN0 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC21.14■□□□□ 0.97
LRFN3Q9BTN0 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.97
LRFN3Q9BTN0 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LRFN3Q9BTN0 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC21.13■□□□□ 0.97
LRFN3Q9BTN0 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
LRFN3Q9BTN0 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.13■□□□□ 0.97
LRFN3Q9BTN0 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC21.13■□□□□ 0.97
LRFN3Q9BTN0 AC145676.1-201ENST00000514988 2004 ntBASIC21.13■□□□□ 0.97
LRFN3Q9BTN0 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms