Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TRIM56Q9BRZ2 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC21.27■■□□□ 1
TRIM56Q9BRZ2 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
TRIM56Q9BRZ2 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
TRIM56Q9BRZ2 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21.27■□□□□ 0.99
TRIM56Q9BRZ2 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
TRIM56Q9BRZ2 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
TRIM56Q9BRZ2 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM56Q9BRZ2 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM56Q9BRZ2 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM56Q9BRZ2 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC21.26■□□□□ 0.99
TRIM56Q9BRZ2 NARF-205ENST00000412079 1760 ntTSL 5 BASIC21.26■□□□□ 0.99
TRIM56Q9BRZ2 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.26■□□□□ 0.99
TRIM56Q9BRZ2 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM56Q9BRZ2 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.26■□□□□ 0.99
TRIM56Q9BRZ2 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC21.26■□□□□ 0.99
TRIM56Q9BRZ2 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC21.26■□□□□ 0.99
TRIM56Q9BRZ2 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
TRIM56Q9BRZ2 AC005837.3-201ENST00000612163 286 ntBASIC21.26■□□□□ 0.99
TRIM56Q9BRZ2 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM56Q9BRZ2 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.26■□□□□ 0.99
TRIM56Q9BRZ2 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM56Q9BRZ2 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
TRIM56Q9BRZ2 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM56Q9BRZ2 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM56Q9BRZ2 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM56Q9BRZ2 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM56Q9BRZ2 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.25■□□□□ 0.99
TRIM56Q9BRZ2 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM56Q9BRZ2 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM56Q9BRZ2 EDA-201ENST00000338901 1233 ntBASIC21.25■□□□□ 0.99
TRIM56Q9BRZ2 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
TRIM56Q9BRZ2 AL136967.2-201ENST00000623968 743 ntBASIC21.25■□□□□ 0.99
TRIM56Q9BRZ2 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM56Q9BRZ2 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM56Q9BRZ2 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM56Q9BRZ2 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM56Q9BRZ2 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM56Q9BRZ2 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.25■□□□□ 0.99
TRIM56Q9BRZ2 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM56Q9BRZ2 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC21.24■□□□□ 0.99
TRIM56Q9BRZ2 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM56Q9BRZ2 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM56Q9BRZ2 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.24■□□□□ 0.99
TRIM56Q9BRZ2 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM56Q9BRZ2 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
TRIM56Q9BRZ2 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC21.24■□□□□ 0.99
TRIM56Q9BRZ2 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.24■□□□□ 0.99
TRIM56Q9BRZ2 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.24■□□□□ 0.99
TRIM56Q9BRZ2 AL355001.2-201ENST00000620617 1191 ntBASIC21.24■□□□□ 0.99
TRIM56Q9BRZ2 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
TRIM56Q9BRZ2 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM56Q9BRZ2 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM56Q9BRZ2 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21.23■□□□□ 0.99
TRIM56Q9BRZ2 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
TRIM56Q9BRZ2 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.23■□□□□ 0.99
TRIM56Q9BRZ2 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM56Q9BRZ2 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.23■□□□□ 0.99
TRIM56Q9BRZ2 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM56Q9BRZ2 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.23■□□□□ 0.99
TRIM56Q9BRZ2 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC21.23■□□□□ 0.99
TRIM56Q9BRZ2 AC005224.4-201ENST00000583262 1652 ntBASIC21.23■□□□□ 0.99
TRIM56Q9BRZ2 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM56Q9BRZ2 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC21.23■□□□□ 0.99
TRIM56Q9BRZ2 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM56Q9BRZ2 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM56Q9BRZ2 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC21.23■□□□□ 0.99
TRIM56Q9BRZ2 RASA4CP-201ENST00000424092 1398 ntBASIC21.23■□□□□ 0.99
TRIM56Q9BRZ2 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TRIM56Q9BRZ2 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRIM56Q9BRZ2 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRIM56Q9BRZ2 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRIM56Q9BRZ2 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TRIM56Q9BRZ2 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.22■□□□□ 0.99
TRIM56Q9BRZ2 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC21.22■□□□□ 0.99
TRIM56Q9BRZ2 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRIM56Q9BRZ2 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRIM56Q9BRZ2 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
TRIM56Q9BRZ2 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRIM56Q9BRZ2 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC21.22■□□□□ 0.99
TRIM56Q9BRZ2 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC21.22■□□□□ 0.99
TRIM56Q9BRZ2 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
TRIM56Q9BRZ2 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
TRIM56Q9BRZ2 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.21■□□□□ 0.99
TRIM56Q9BRZ2 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.21■□□□□ 0.99
TRIM56Q9BRZ2 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.21■□□□□ 0.99
TRIM56Q9BRZ2 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC21.21■□□□□ 0.99
TRIM56Q9BRZ2 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
TRIM56Q9BRZ2 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRIM56Q9BRZ2 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.21■□□□□ 0.99
TRIM56Q9BRZ2 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.21■□□□□ 0.99
TRIM56Q9BRZ2 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRIM56Q9BRZ2 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC21.21■□□□□ 0.99
TRIM56Q9BRZ2 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TRIM56Q9BRZ2 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRIM56Q9BRZ2 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRIM56Q9BRZ2 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
TRIM56Q9BRZ2 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
TRIM56Q9BRZ2 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21.2■□□□□ 0.99
TRIM56Q9BRZ2 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms