Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.42■□□□□ 0.86
LMX1AQ8TE12 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
LMX1AQ8TE12 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.42■□□□□ 0.86
LMX1AQ8TE12 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
LMX1AQ8TE12 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LMX1AQ8TE12 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LMX1AQ8TE12 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LMX1AQ8TE12 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LMX1AQ8TE12 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LMX1AQ8TE12 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LMX1AQ8TE12 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LMX1AQ8TE12 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
LMX1AQ8TE12 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.41■□□□□ 0.86
LMX1AQ8TE12 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LMX1AQ8TE12 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LMX1AQ8TE12 AC068473.5-201ENST00000616428 2072 ntBASIC20.41■□□□□ 0.86
LMX1AQ8TE12 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LMX1AQ8TE12 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LMX1AQ8TE12 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LMX1AQ8TE12 KRT18P29-201ENST00000397031 1267 ntBASIC20.41■□□□□ 0.86
LMX1AQ8TE12 AL355472.2-201ENST00000422958 438 ntBASIC20.41■□□□□ 0.86
LMX1AQ8TE12 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.41■□□□□ 0.86
LMX1AQ8TE12 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.41■□□□□ 0.86
LMX1AQ8TE12 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
LMX1AQ8TE12 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LMX1AQ8TE12 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
LMX1AQ8TE12 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LMX1AQ8TE12 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
LMX1AQ8TE12 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LMX1AQ8TE12 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.41■□□□□ 0.86
LMX1AQ8TE12 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LMX1AQ8TE12 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LMX1AQ8TE12 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LMX1AQ8TE12 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.41■□□□□ 0.86
LMX1AQ8TE12 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LMX1AQ8TE12 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.4■□□□□ 0.86
LMX1AQ8TE12 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LMX1AQ8TE12 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LMX1AQ8TE12 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.4■□□□□ 0.86
LMX1AQ8TE12 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.4■□□□□ 0.86
LMX1AQ8TE12 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.4■□□□□ 0.86
LMX1AQ8TE12 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LMX1AQ8TE12 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.4■□□□□ 0.86
LMX1AQ8TE12 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LMX1AQ8TE12 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.4■□□□□ 0.86
LMX1AQ8TE12 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.39■□□□□ 0.86
LMX1AQ8TE12 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.86
LMX1AQ8TE12 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
LMX1AQ8TE12 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
LMX1AQ8TE12 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
LMX1AQ8TE12 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
LMX1AQ8TE12 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
LMX1AQ8TE12 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.39■□□□□ 0.85
LMX1AQ8TE12 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LMX1AQ8TE12 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
LMX1AQ8TE12 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.39■□□□□ 0.85
LMX1AQ8TE12 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LMX1AQ8TE12 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
LMX1AQ8TE12 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
LMX1AQ8TE12 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
LMX1AQ8TE12 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC20.39■□□□□ 0.85
LMX1AQ8TE12 FAM21FP-204ENST00000608637 956 ntBASIC20.39■□□□□ 0.85
LMX1AQ8TE12 ITM2C-210ENST00000620962 501 ntBASIC20.39■□□□□ 0.85
LMX1AQ8TE12 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LMX1AQ8TE12 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
LMX1AQ8TE12 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.39■□□□□ 0.85
LMX1AQ8TE12 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
LMX1AQ8TE12 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
LMX1AQ8TE12 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LMX1AQ8TE12 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.39■□□□□ 0.85
LMX1AQ8TE12 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LMX1AQ8TE12 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LMX1AQ8TE12 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
LMX1AQ8TE12 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LMX1AQ8TE12 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LMX1AQ8TE12 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
LMX1AQ8TE12 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
LMX1AQ8TE12 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LMX1AQ8TE12 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LMX1AQ8TE12 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC20.38■□□□□ 0.85
LMX1AQ8TE12 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
LMX1AQ8TE12 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC20.38■□□□□ 0.85
LMX1AQ8TE12 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC20.38■□□□□ 0.85
LMX1AQ8TE12 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.38■□□□□ 0.85
LMX1AQ8TE12 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
LMX1AQ8TE12 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LMX1AQ8TE12 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
LMX1AQ8TE12 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.38■□□□□ 0.85
LMX1AQ8TE12 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.38■□□□□ 0.85
LMX1AQ8TE12 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LMX1AQ8TE12 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LMX1AQ8TE12 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LMX1AQ8TE12 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
LMX1AQ8TE12 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LMX1AQ8TE12 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
LMX1AQ8TE12 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.37■□□□□ 0.85
LMX1AQ8TE12 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LMX1AQ8TE12 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC20.37■□□□□ 0.85
LMX1AQ8TE12 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LMX1AQ8TE12 AC008687.6-201ENST00000596318 630 ntBASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms