Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ZNF540Q8NDQ6 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.27■□□□□ 0.68
ZNF540Q8NDQ6 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
ZNF540Q8NDQ6 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
ZNF540Q8NDQ6 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
ZNF540Q8NDQ6 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.27■□□□□ 0.68
ZNF540Q8NDQ6 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
ZNF540Q8NDQ6 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ZNF540Q8NDQ6 AP005212.1-201ENST00000581547 1997 ntBASIC19.27■□□□□ 0.68
ZNF540Q8NDQ6 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ZNF540Q8NDQ6 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ZNF540Q8NDQ6 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ZNF540Q8NDQ6 AC142381.2-201ENST00000566120 298 ntBASIC19.27■□□□□ 0.68
ZNF540Q8NDQ6 AL136162.1-201ENST00000607711 1078 ntBASIC19.27■□□□□ 0.68
ZNF540Q8NDQ6 NKILA-201ENST00000613231 537 ntTSL 4 BASIC19.27■□□□□ 0.68
ZNF540Q8NDQ6 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ZNF540Q8NDQ6 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.27■□□□□ 0.68
ZNF540Q8NDQ6 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.27■□□□□ 0.68
ZNF540Q8NDQ6 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ZNF540Q8NDQ6 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
ZNF540Q8NDQ6 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.27■□□□□ 0.67
ZNF540Q8NDQ6 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.27■□□□□ 0.67
ZNF540Q8NDQ6 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
ZNF540Q8NDQ6 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
ZNF540Q8NDQ6 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.27■□□□□ 0.67
ZNF540Q8NDQ6 AFG3L1P-217ENST00000557444 2447 ntBASIC19.26■□□□□ 0.67
ZNF540Q8NDQ6 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
ZNF540Q8NDQ6 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
ZNF540Q8NDQ6 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
ZNF540Q8NDQ6 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC19.26■□□□□ 0.67
ZNF540Q8NDQ6 AC079089.2-201ENST00000531211 1277 ntBASIC19.26■□□□□ 0.67
ZNF540Q8NDQ6 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
ZNF540Q8NDQ6 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ZNF540Q8NDQ6 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.26■□□□□ 0.67
ZNF540Q8NDQ6 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ZNF540Q8NDQ6 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
ZNF540Q8NDQ6 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ZNF540Q8NDQ6 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.25■□□□□ 0.67
ZNF540Q8NDQ6 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
ZNF540Q8NDQ6 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
ZNF540Q8NDQ6 EDA-201ENST00000338901 1233 ntBASIC19.25■□□□□ 0.67
ZNF540Q8NDQ6 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC19.25■□□□□ 0.67
ZNF540Q8NDQ6 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ZNF540Q8NDQ6 SF1-220ENST00000626028 704 ntTSL 2 BASIC19.25■□□□□ 0.67
ZNF540Q8NDQ6 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ZNF540Q8NDQ6 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ZNF540Q8NDQ6 AC073314.1-201ENST00000568729 2216 ntBASIC19.25■□□□□ 0.67
ZNF540Q8NDQ6 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.25■□□□□ 0.67
ZNF540Q8NDQ6 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC19.24■□□□□ 0.67
ZNF540Q8NDQ6 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF540Q8NDQ6 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
ZNF540Q8NDQ6 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
ZNF540Q8NDQ6 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC19.24■□□□□ 0.67
ZNF540Q8NDQ6 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF540Q8NDQ6 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF540Q8NDQ6 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF540Q8NDQ6 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC19.24■□□□□ 0.67
ZNF540Q8NDQ6 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF540Q8NDQ6 EBPL-204ENST00000378272 766 ntTSL 3 BASIC19.24■□□□□ 0.67
ZNF540Q8NDQ6 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC19.24■□□□□ 0.67
ZNF540Q8NDQ6 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC19.24■□□□□ 0.67
ZNF540Q8NDQ6 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
ZNF540Q8NDQ6 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF540Q8NDQ6 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF540Q8NDQ6 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
ZNF540Q8NDQ6 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF540Q8NDQ6 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.24■□□□□ 0.67
ZNF540Q8NDQ6 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
ZNF540Q8NDQ6 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF540Q8NDQ6 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF540Q8NDQ6 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
ZNF540Q8NDQ6 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF540Q8NDQ6 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF540Q8NDQ6 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
ZNF540Q8NDQ6 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF540Q8NDQ6 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.23■□□□□ 0.67
ZNF540Q8NDQ6 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.23■□□□□ 0.67
ZNF540Q8NDQ6 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF540Q8NDQ6 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.23■□□□□ 0.67
ZNF540Q8NDQ6 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF540Q8NDQ6 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF540Q8NDQ6 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF540Q8NDQ6 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC19.23■□□□□ 0.67
ZNF540Q8NDQ6 AL355001.2-201ENST00000620617 1191 ntBASIC19.23■□□□□ 0.67
ZNF540Q8NDQ6 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.23■□□□□ 0.67
ZNF540Q8NDQ6 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF540Q8NDQ6 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF540Q8NDQ6 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
ZNF540Q8NDQ6 OR7E47P-201ENST00000546390 1422 ntBASIC19.23■□□□□ 0.67
ZNF540Q8NDQ6 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF540Q8NDQ6 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF540Q8NDQ6 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.23■□□□□ 0.67
ZNF540Q8NDQ6 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
ZNF540Q8NDQ6 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF540Q8NDQ6 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF540Q8NDQ6 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF540Q8NDQ6 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF540Q8NDQ6 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF540Q8NDQ6 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
ZNF540Q8NDQ6 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms