Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
CCDC144BQ3MJ40 AC010141.2-201ENST00000452426 721 ntBASIC24.25■■□□□ 1.47
CCDC144BQ3MJ40 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC24.25■■□□□ 1.47
CCDC144BQ3MJ40 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC24.25■■□□□ 1.47
CCDC144BQ3MJ40 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC24.25■■□□□ 1.47
CCDC144BQ3MJ40 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC24.25■■□□□ 1.47
CCDC144BQ3MJ40 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC24.25■■□□□ 1.47
CCDC144BQ3MJ40 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
CCDC144BQ3MJ40 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CCDC144BQ3MJ40 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CCDC144BQ3MJ40 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CCDC144BQ3MJ40 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CCDC144BQ3MJ40 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
CCDC144BQ3MJ40 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC24.24■■□□□ 1.47
CCDC144BQ3MJ40 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CCDC144BQ3MJ40 KLF13-207ENST00000560473 489 ntTSL 3 BASIC24.24■■□□□ 1.47
CCDC144BQ3MJ40 AC138907.5-202ENST00000569484 235 ntBASIC24.24■■□□□ 1.47
CCDC144BQ3MJ40 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
CCDC144BQ3MJ40 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC24.24■■□□□ 1.47
CCDC144BQ3MJ40 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
CCDC144BQ3MJ40 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC24.24■■□□□ 1.47
CCDC144BQ3MJ40 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC24.24■■□□□ 1.47
CCDC144BQ3MJ40 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
CCDC144BQ3MJ40 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC24.23■■□□□ 1.47
CCDC144BQ3MJ40 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC24.23■■□□□ 1.47
CCDC144BQ3MJ40 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC24.23■■□□□ 1.47
CCDC144BQ3MJ40 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
CCDC144BQ3MJ40 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC24.23■■□□□ 1.47
CCDC144BQ3MJ40 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
CCDC144BQ3MJ40 SLC29A4P1-201ENST00000398760 971 ntBASIC24.23■■□□□ 1.47
CCDC144BQ3MJ40 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC24.23■■□□□ 1.47
CCDC144BQ3MJ40 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC24.23■■□□□ 1.47
CCDC144BQ3MJ40 TSPY20P-201ENST00000450910 630 ntBASIC24.23■■□□□ 1.47
CCDC144BQ3MJ40 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
CCDC144BQ3MJ40 KRT18P6-201ENST00000555540 1265 ntBASIC24.23■■□□□ 1.47
CCDC144BQ3MJ40 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC24.23■■□□□ 1.47
CCDC144BQ3MJ40 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC24.23■■□□□ 1.47
CCDC144BQ3MJ40 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CCDC144BQ3MJ40 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CCDC144BQ3MJ40 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CCDC144BQ3MJ40 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CCDC144BQ3MJ40 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CCDC144BQ3MJ40 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
CCDC144BQ3MJ40 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CCDC144BQ3MJ40 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CCDC144BQ3MJ40 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CCDC144BQ3MJ40 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC24.22■■□□□ 1.47
CCDC144BQ3MJ40 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC24.22■■□□□ 1.47
CCDC144BQ3MJ40 FXN-202ENST00000396364 980 ntTSL 5 BASIC24.22■■□□□ 1.47
CCDC144BQ3MJ40 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC24.22■■□□□ 1.47
CCDC144BQ3MJ40 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC24.22■■□□□ 1.47
CCDC144BQ3MJ40 AC010536.3-201ENST00000620306 533 ntBASIC24.22■■□□□ 1.47
CCDC144BQ3MJ40 PFKL-212ENST00000628044 129 ntTSL 3 BASIC24.22■■□□□ 1.47
CCDC144BQ3MJ40 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
CCDC144BQ3MJ40 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
CCDC144BQ3MJ40 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
CCDC144BQ3MJ40 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
CCDC144BQ3MJ40 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
CCDC144BQ3MJ40 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC24.21■■□□□ 1.47
CCDC144BQ3MJ40 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC24.21■■□□□ 1.47
CCDC144BQ3MJ40 KRT18P20-201ENST00000548986 1279 ntBASIC24.21■■□□□ 1.47
CCDC144BQ3MJ40 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC24.21■■□□□ 1.47
CCDC144BQ3MJ40 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
CCDC144BQ3MJ40 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC24.2■■□□□ 1.47
CCDC144BQ3MJ40 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC144BQ3MJ40 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC24.2■■□□□ 1.46
CCDC144BQ3MJ40 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC144BQ3MJ40 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC24.2■■□□□ 1.46
CCDC144BQ3MJ40 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC144BQ3MJ40 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC24.2■■□□□ 1.46
CCDC144BQ3MJ40 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC24.2■■□□□ 1.46
CCDC144BQ3MJ40 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC24.2■■□□□ 1.46
CCDC144BQ3MJ40 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC144BQ3MJ40 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC144BQ3MJ40 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC24.2■■□□□ 1.46
CCDC144BQ3MJ40 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC144BQ3MJ40 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC144BQ3MJ40 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC144BQ3MJ40 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC24.2■■□□□ 1.46
CCDC144BQ3MJ40 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CCDC144BQ3MJ40 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CCDC144BQ3MJ40 OR7E47P-201ENST00000546390 1422 ntBASIC24.19■■□□□ 1.46
CCDC144BQ3MJ40 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CCDC144BQ3MJ40 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC24.19■■□□□ 1.46
CCDC144BQ3MJ40 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC24.19■■□□□ 1.46
CCDC144BQ3MJ40 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC24.19■■□□□ 1.46
CCDC144BQ3MJ40 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
CCDC144BQ3MJ40 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CCDC144BQ3MJ40 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC24.19■■□□□ 1.46
CCDC144BQ3MJ40 AF201337.1-201ENST00000520239 748 ntBASIC24.19■■□□□ 1.46
CCDC144BQ3MJ40 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC24.19■■□□□ 1.46
CCDC144BQ3MJ40 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC24.19■■□□□ 1.46
CCDC144BQ3MJ40 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC24.19■■□□□ 1.46
CCDC144BQ3MJ40 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC24.19■■□□□ 1.46
CCDC144BQ3MJ40 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC24.19■■□□□ 1.46
CCDC144BQ3MJ40 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CCDC144BQ3MJ40 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CCDC144BQ3MJ40 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CCDC144BQ3MJ40 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC24.18■■□□□ 1.46
CCDC144BQ3MJ40 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms