Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LSM3P62310 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
LSM3P62310 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
LSM3P62310 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LSM3P62310 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LSM3P62310 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.82■□□□□ 0.6
LSM3P62310 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
LSM3P62310 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LSM3P62310 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LSM3P62310 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LSM3P62310 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LSM3P62310 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LSM3P62310 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LSM3P62310 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LSM3P62310 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
LSM3P62310 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LSM3P62310 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.82■□□□□ 0.6
LSM3P62310 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LSM3P62310 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LSM3P62310 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LSM3P62310 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
LSM3P62310 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LSM3P62310 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LSM3P62310 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.81■□□□□ 0.6
LSM3P62310 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.81■□□□□ 0.6
LSM3P62310 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC18.81■□□□□ 0.6
LSM3P62310 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC18.81■□□□□ 0.6
LSM3P62310 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LSM3P62310 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LSM3P62310 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LSM3P62310 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
LSM3P62310 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LSM3P62310 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LSM3P62310 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
LSM3P62310 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC18.81■□□□□ 0.6
LSM3P62310 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC18.81■□□□□ 0.6
LSM3P62310 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
LSM3P62310 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
LSM3P62310 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC18.81■□□□□ 0.6
LSM3P62310 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
LSM3P62310 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LSM3P62310 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LSM3P62310 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LSM3P62310 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LSM3P62310 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.81■□□□□ 0.6
LSM3P62310 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LSM3P62310 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC18.81■□□□□ 0.6
LSM3P62310 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
LSM3P62310 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
LSM3P62310 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
LSM3P62310 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LSM3P62310 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LSM3P62310 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
LSM3P62310 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC18.8■□□□□ 0.6
LSM3P62310 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
LSM3P62310 HYI-210ENST00000486909 905 ntTSL 5 BASIC18.8■□□□□ 0.6
LSM3P62310 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
LSM3P62310 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LSM3P62310 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LSM3P62310 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC18.8■□□□□ 0.6
LSM3P62310 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC18.8■□□□□ 0.6
LSM3P62310 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.8■□□□□ 0.6
LSM3P62310 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC18.8■□□□□ 0.6
LSM3P62310 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC18.8■□□□□ 0.6
LSM3P62310 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LSM3P62310 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LSM3P62310 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LSM3P62310 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.79■□□□□ 0.6
LSM3P62310 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LSM3P62310 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
LSM3P62310 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LSM3P62310 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
LSM3P62310 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LSM3P62310 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LSM3P62310 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LSM3P62310 SNX5-217ENST00000606557 1087 ntBASIC18.79■□□□□ 0.6
LSM3P62310 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LSM3P62310 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LSM3P62310 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
LSM3P62310 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LSM3P62310 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.79■□□□□ 0.6
LSM3P62310 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LSM3P62310 AC116562.4-201ENST00000641316 2276 ntBASIC18.79■□□□□ 0.6
LSM3P62310 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.79■□□□□ 0.6
LSM3P62310 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
LSM3P62310 AC020907.5-201ENST00000624372 1936 ntBASIC18.78■□□□□ 0.6
LSM3P62310 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
LSM3P62310 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
LSM3P62310 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LSM3P62310 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC18.78■□□□□ 0.6
LSM3P62310 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LSM3P62310 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC18.78■□□□□ 0.6
LSM3P62310 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LSM3P62310 AC079089.2-201ENST00000531211 1277 ntBASIC18.78■□□□□ 0.6
LSM3P62310 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC18.78■□□□□ 0.6
LSM3P62310 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LSM3P62310 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LSM3P62310 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LSM3P62310 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
LSM3P62310 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms