Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC21.84■■□□□ 1.09
HDAC4P56524 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HDAC4P56524 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
HDAC4P56524 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.84■■□□□ 1.09
HDAC4P56524 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
HDAC4P56524 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.83■■□□□ 1.09
HDAC4P56524 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.83■■□□□ 1.09
HDAC4P56524 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.83■■□□□ 1.09
HDAC4P56524 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.83■■□□□ 1.09
HDAC4P56524 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.83■■□□□ 1.09
HDAC4P56524 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
HDAC4P56524 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC21.83■■□□□ 1.09
HDAC4P56524 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
HDAC4P56524 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.83■■□□□ 1.09
HDAC4P56524 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC21.83■■□□□ 1.09
HDAC4P56524 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
HDAC4P56524 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
HDAC4P56524 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.83■■□□□ 1.09
HDAC4P56524 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
HDAC4P56524 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
HDAC4P56524 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.83■■□□□ 1.08
HDAC4P56524 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.83■■□□□ 1.08
HDAC4P56524 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HDAC4P56524 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
HDAC4P56524 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HDAC4P56524 AL049796.1-201ENST00000565336 1766 ntBASIC21.82■■□□□ 1.08
HDAC4P56524 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HDAC4P56524 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
HDAC4P56524 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
HDAC4P56524 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.82■■□□□ 1.08
HDAC4P56524 POU5F1P4-201ENST00000413175 1085 ntBASIC21.82■■□□□ 1.08
HDAC4P56524 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.82■■□□□ 1.08
HDAC4P56524 AC008175.2-201ENST00000612840 297 ntBASIC21.82■■□□□ 1.08
HDAC4P56524 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
HDAC4P56524 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HDAC4P56524 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
HDAC4P56524 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HDAC4P56524 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HDAC4P56524 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC21.82■■□□□ 1.08
HDAC4P56524 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HDAC4P56524 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.81■■□□□ 1.08
HDAC4P56524 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HDAC4P56524 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
HDAC4P56524 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.81■■□□□ 1.08
HDAC4P56524 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HDAC4P56524 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC21.81■■□□□ 1.08
HDAC4P56524 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HDAC4P56524 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HDAC4P56524 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HDAC4P56524 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HDAC4P56524 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HDAC4P56524 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
HDAC4P56524 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.81■■□□□ 1.08
HDAC4P56524 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
HDAC4P56524 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.8■■□□□ 1.08
HDAC4P56524 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC21.8■■□□□ 1.08
HDAC4P56524 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
HDAC4P56524 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HDAC4P56524 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HDAC4P56524 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HDAC4P56524 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
HDAC4P56524 KRT19P1-201ENST00000405746 1186 ntBASIC21.8■■□□□ 1.08
HDAC4P56524 KRT18P5-201ENST00000436075 1291 ntBASIC21.8■■□□□ 1.08
HDAC4P56524 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC21.8■■□□□ 1.08
HDAC4P56524 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC21.8■■□□□ 1.08
HDAC4P56524 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HDAC4P56524 PKD1P6-201ENST00000343738 4769 ntBASIC21.8■■□□□ 1.08
HDAC4P56524 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HDAC4P56524 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HDAC4P56524 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC21.8■■□□□ 1.08
HDAC4P56524 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
HDAC4P56524 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.79■■□□□ 1.08
HDAC4P56524 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
HDAC4P56524 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HDAC4P56524 SLC7A5P2-201ENST00000553010 536 ntBASIC21.79■■□□□ 1.08
HDAC4P56524 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC21.79■■□□□ 1.08
HDAC4P56524 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
HDAC4P56524 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
HDAC4P56524 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HDAC4P56524 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HDAC4P56524 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC21.79■■□□□ 1.08
HDAC4P56524 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HDAC4P56524 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HDAC4P56524 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HDAC4P56524 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HDAC4P56524 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HDAC4P56524 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC21.78■■□□□ 1.08
HDAC4P56524 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HDAC4P56524 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.78■■□□□ 1.08
HDAC4P56524 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC21.78■■□□□ 1.08
HDAC4P56524 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
HDAC4P56524 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HDAC4P56524 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HDAC4P56524 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
HDAC4P56524 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
HDAC4P56524 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
HDAC4P56524 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
HDAC4P56524 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC21.77■■□□□ 1.08
HDAC4P56524 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HDAC4P56524 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms