Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
PKNOX1P55347 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.44■□□□□ 0.86
PKNOX1P55347 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.44■□□□□ 0.86
PKNOX1P55347 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.44■□□□□ 0.86
PKNOX1P55347 AC008764.7-201ENST00000593779 1081 ntBASIC20.44■□□□□ 0.86
PKNOX1P55347 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.44■□□□□ 0.86
PKNOX1P55347 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.44■□□□□ 0.86
PKNOX1P55347 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
PKNOX1P55347 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.44■□□□□ 0.86
PKNOX1P55347 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.44■□□□□ 0.86
PKNOX1P55347 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PKNOX1P55347 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.44■□□□□ 0.86
PKNOX1P55347 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
PKNOX1P55347 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
PKNOX1P55347 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PKNOX1P55347 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
PKNOX1P55347 AC027682.1-201ENST00000562846 899 ntBASIC20.43■□□□□ 0.86
PKNOX1P55347 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.43■□□□□ 0.86
PKNOX1P55347 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
PKNOX1P55347 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PKNOX1P55347 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.43■□□□□ 0.86
PKNOX1P55347 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
PKNOX1P55347 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.43■□□□□ 0.86
PKNOX1P55347 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PKNOX1P55347 AC055733.4-201ENST00000638462 1354 ntBASIC20.43■□□□□ 0.86
PKNOX1P55347 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PKNOX1P55347 FEM1AP1-201ENST00000431297 1995 ntBASIC20.43■□□□□ 0.86
PKNOX1P55347 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.42■□□□□ 0.86
PKNOX1P55347 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PKNOX1P55347 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.42■□□□□ 0.86
PKNOX1P55347 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PKNOX1P55347 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PKNOX1P55347 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.42■□□□□ 0.86
PKNOX1P55347 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
PKNOX1P55347 AC099791.1-201ENST00000416440 715 ntBASIC20.42■□□□□ 0.86
PKNOX1P55347 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
PKNOX1P55347 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.42■□□□□ 0.86
PKNOX1P55347 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PKNOX1P55347 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.42■□□□□ 0.86
PKNOX1P55347 AC105233.4-201ENST00000642045 216 ntBASIC20.42■□□□□ 0.86
PKNOX1P55347 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PKNOX1P55347 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PKNOX1P55347 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PKNOX1P55347 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.42■□□□□ 0.86
PKNOX1P55347 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PKNOX1P55347 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.41■□□□□ 0.86
PKNOX1P55347 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PKNOX1P55347 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.41■□□□□ 0.86
PKNOX1P55347 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.41■□□□□ 0.86
PKNOX1P55347 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.41■□□□□ 0.86
PKNOX1P55347 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
PKNOX1P55347 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.41■□□□□ 0.86
PKNOX1P55347 AC008406.3-201ENST00000620001 1374 ntBASIC20.41■□□□□ 0.86
PKNOX1P55347 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
PKNOX1P55347 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
PKNOX1P55347 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.41■□□□□ 0.86
PKNOX1P55347 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PKNOX1P55347 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.41■□□□□ 0.86
PKNOX1P55347 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PKNOX1P55347 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PKNOX1P55347 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
PKNOX1P55347 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PKNOX1P55347 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PKNOX1P55347 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PKNOX1P55347 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PKNOX1P55347 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.4■□□□□ 0.86
PKNOX1P55347 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.4■□□□□ 0.86
PKNOX1P55347 PBX2P1-201ENST00000493219 1291 ntBASIC20.4■□□□□ 0.86
PKNOX1P55347 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.4■□□□□ 0.86
PKNOX1P55347 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PKNOX1P55347 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.39■□□□□ 0.86
PKNOX1P55347 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PKNOX1P55347 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PKNOX1P55347 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
PKNOX1P55347 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
PKNOX1P55347 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.86
PKNOX1P55347 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
PKNOX1P55347 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
PKNOX1P55347 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PKNOX1P55347 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PKNOX1P55347 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PKNOX1P55347 TSPY26P-201ENST00000476365 1326 ntBASIC20.39■□□□□ 0.85
PKNOX1P55347 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PKNOX1P55347 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PKNOX1P55347 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.39■□□□□ 0.85
PKNOX1P55347 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PKNOX1P55347 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.39■□□□□ 0.85
PKNOX1P55347 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
PKNOX1P55347 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.39■□□□□ 0.85
PKNOX1P55347 AC096631.2-201ENST00000436136 790 ntBASIC20.39■□□□□ 0.85
PKNOX1P55347 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.39■□□□□ 0.85
PKNOX1P55347 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.39■□□□□ 0.85
PKNOX1P55347 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
PKNOX1P55347 AC106739.1-201ENST00000617035 715 ntBASIC20.39■□□□□ 0.85
PKNOX1P55347 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PKNOX1P55347 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PKNOX1P55347 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PKNOX1P55347 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.39■□□□□ 0.85
PKNOX1P55347 AC005224.4-201ENST00000583262 1652 ntBASIC20.38■□□□□ 0.85
PKNOX1P55347 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms