Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
FOXA1P55317 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
FOXA1P55317 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
FOXA1P55317 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.25■□□□□ 0.83
FOXA1P55317 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
FOXA1P55317 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
FOXA1P55317 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
FOXA1P55317 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
FOXA1P55317 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
FOXA1P55317 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
FOXA1P55317 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.25■□□□□ 0.83
FOXA1P55317 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
FOXA1P55317 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
FOXA1P55317 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.25■□□□□ 0.83
FOXA1P55317 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.25■□□□□ 0.83
FOXA1P55317 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
FOXA1P55317 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
FOXA1P55317 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
FOXA1P55317 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.25■□□□□ 0.83
FOXA1P55317 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
FOXA1P55317 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
FOXA1P55317 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
FOXA1P55317 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
FOXA1P55317 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
FOXA1P55317 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
FOXA1P55317 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
FOXA1P55317 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
FOXA1P55317 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
FOXA1P55317 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.24■□□□□ 0.83
FOXA1P55317 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.24■□□□□ 0.83
FOXA1P55317 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
FOXA1P55317 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.24■□□□□ 0.83
FOXA1P55317 RASA4CP-201ENST00000424092 1398 ntBASIC20.24■□□□□ 0.83
FOXA1P55317 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
FOXA1P55317 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.24■□□□□ 0.83
FOXA1P55317 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
FOXA1P55317 AL355001.2-201ENST00000620617 1191 ntBASIC20.24■□□□□ 0.83
FOXA1P55317 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
FOXA1P55317 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
FOXA1P55317 AP005212.1-201ENST00000581547 1997 ntBASIC20.24■□□□□ 0.83
FOXA1P55317 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
FOXA1P55317 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.24■□□□□ 0.83
FOXA1P55317 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
FOXA1P55317 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
FOXA1P55317 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
FOXA1P55317 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
FOXA1P55317 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
FOXA1P55317 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
FOXA1P55317 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
FOXA1P55317 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
FOXA1P55317 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
FOXA1P55317 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.23■□□□□ 0.83
FOXA1P55317 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.23■□□□□ 0.83
FOXA1P55317 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.23■□□□□ 0.83
FOXA1P55317 AC121338.2-201ENST00000622535 1744 ntBASIC20.23■□□□□ 0.83
FOXA1P55317 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.23■□□□□ 0.83
FOXA1P55317 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
FOXA1P55317 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
FOXA1P55317 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.23■□□□□ 0.83
FOXA1P55317 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
FOXA1P55317 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
FOXA1P55317 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
FOXA1P55317 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
FOXA1P55317 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
FOXA1P55317 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
FOXA1P55317 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
FOXA1P55317 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
FOXA1P55317 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
FOXA1P55317 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
FOXA1P55317 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
FOXA1P55317 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
FOXA1P55317 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
FOXA1P55317 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
FOXA1P55317 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.22■□□□□ 0.83
FOXA1P55317 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.22■□□□□ 0.83
FOXA1P55317 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.22■□□□□ 0.83
FOXA1P55317 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.22■□□□□ 0.83
FOXA1P55317 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.22■□□□□ 0.83
FOXA1P55317 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.22■□□□□ 0.83
FOXA1P55317 AL136967.2-201ENST00000623968 743 ntBASIC20.22■□□□□ 0.83
FOXA1P55317 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.22■□□□□ 0.83
FOXA1P55317 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
FOXA1P55317 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
FOXA1P55317 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
FOXA1P55317 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.21■□□□□ 0.83
FOXA1P55317 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
FOXA1P55317 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
FOXA1P55317 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.21■□□□□ 0.83
FOXA1P55317 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.21■□□□□ 0.83
FOXA1P55317 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
FOXA1P55317 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
FOXA1P55317 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
FOXA1P55317 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.21■□□□□ 0.83
FOXA1P55317 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
FOXA1P55317 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.21■□□□□ 0.83
FOXA1P55317 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
FOXA1P55317 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
FOXA1P55317 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.2■□□□□ 0.82
FOXA1P55317 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
FOXA1P55317 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms