Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
COL4A4P53420 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
COL4A4P53420 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
COL4A4P53420 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
COL4A4P53420 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC22.57■■□□□ 1.2
COL4A4P53420 MIR718-201ENST00000390190 70 ntBASIC22.57■■□□□ 1.2
COL4A4P53420 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC22.57■■□□□ 1.2
COL4A4P53420 AC233263.1-201ENST00000578059 224 ntBASIC22.57■■□□□ 1.2
COL4A4P53420 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC22.57■■□□□ 1.2
COL4A4P53420 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC22.57■■□□□ 1.2
COL4A4P53420 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
COL4A4P53420 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC22.56■■□□□ 1.2
COL4A4P53420 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC22.56■■□□□ 1.2
COL4A4P53420 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC22.56■■□□□ 1.2
COL4A4P53420 SNORA78-201ENST00000459373 127 ntBASIC22.56■■□□□ 1.2
COL4A4P53420 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC22.56■■□□□ 1.2
COL4A4P53420 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
COL4A4P53420 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
COL4A4P53420 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
COL4A4P53420 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
COL4A4P53420 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
COL4A4P53420 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
COL4A4P53420 AL355472.2-201ENST00000422958 438 ntBASIC22.55■■□□□ 1.2
COL4A4P53420 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC22.55■■□□□ 1.2
COL4A4P53420 AC008175.2-201ENST00000612840 297 ntBASIC22.55■■□□□ 1.2
COL4A4P53420 AC120498.10-201ENST00000621827 505 ntBASIC22.55■■□□□ 1.2
COL4A4P53420 LTK-203ENST00000453182 2412 ntTSL 2 BASIC22.55■■□□□ 1.2
COL4A4P53420 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL4A4P53420 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC22.55■■□□□ 1.2
COL4A4P53420 ECEL1P1-201ENST00000373592 1742 ntBASIC22.55■■□□□ 1.2
COL4A4P53420 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL4A4P53420 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC22.55■■□□□ 1.2
COL4A4P53420 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC22.55■■□□□ 1.2
COL4A4P53420 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL4A4P53420 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC22.55■■□□□ 1.2
COL4A4P53420 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
COL4A4P53420 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
COL4A4P53420 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
COL4A4P53420 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
COL4A4P53420 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC22.55■■□□□ 1.2
COL4A4P53420 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL4A4P53420 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
COL4A4P53420 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC22.54■■□□□ 1.2
COL4A4P53420 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC22.54■■□□□ 1.2
COL4A4P53420 GUSBP5-202ENST00000510805 1989 ntBASIC22.54■■□□□ 1.2
COL4A4P53420 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
COL4A4P53420 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC22.54■■□□□ 1.2
COL4A4P53420 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
COL4A4P53420 RPPH1-201ENST00000516869 333 ntBASIC22.54■■□□□ 1.2
COL4A4P53420 CD44-222ENST00000526025 1052 ntTSL 2 BASIC22.54■■□□□ 1.2
COL4A4P53420 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL4A4P53420 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
COL4A4P53420 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
COL4A4P53420 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL4A4P53420 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
COL4A4P53420 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL4A4P53420 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
COL4A4P53420 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL4A4P53420 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC22.53■■□□□ 1.2
COL4A4P53420 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL4A4P53420 PNMA6B-201ENST00000538162 1200 ntBASIC22.53■■□□□ 1.2
COL4A4P53420 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC22.53■■□□□ 1.2
COL4A4P53420 CBFB-203ENST00000561924 584 ntTSL 5 BASIC22.53■■□□□ 1.2
COL4A4P53420 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC22.53■■□□□ 1.2
COL4A4P53420 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC22.53■■□□□ 1.2
COL4A4P53420 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC22.53■■□□□ 1.2
COL4A4P53420 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL4A4P53420 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
COL4A4P53420 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL4A4P53420 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL4A4P53420 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL4A4P53420 AC242852.2-201ENST00000615738 1807 ntBASIC22.53■■□□□ 1.2
COL4A4P53420 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC22.53■■□□□ 1.2
COL4A4P53420 AC233723.2-201ENST00000623798 2106 ntBASIC22.53■■□□□ 1.2
COL4A4P53420 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
COL4A4P53420 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC22.52■■□□□ 1.2
COL4A4P53420 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
COL4A4P53420 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
COL4A4P53420 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
COL4A4P53420 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC22.52■■□□□ 1.2
COL4A4P53420 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC22.52■■□□□ 1.2
COL4A4P53420 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC22.52■■□□□ 1.2
COL4A4P53420 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC22.52■■□□□ 1.2
COL4A4P53420 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
COL4A4P53420 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
COL4A4P53420 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC22.52■■□□□ 1.2
COL4A4P53420 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
COL4A4P53420 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
COL4A4P53420 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
COL4A4P53420 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC22.52■■□□□ 1.2
COL4A4P53420 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
COL4A4P53420 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
COL4A4P53420 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC22.52■■□□□ 1.2
COL4A4P53420 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC22.52■■□□□ 1.2
COL4A4P53420 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
COL4A4P53420 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC22.52■■□□□ 1.2
COL4A4P53420 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
COL4A4P53420 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
COL4A4P53420 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC22.52■■□□□ 1.2
COL4A4P53420 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms