Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH2P43246 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH2P43246 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC21.19■□□□□ 0.98
MSH2P43246 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
MSH2P43246 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC21.19■□□□□ 0.98
MSH2P43246 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC21.19■□□□□ 0.98
MSH2P43246 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
MSH2P43246 AL138724.1-201ENST00000606771 1088 ntBASIC21.19■□□□□ 0.98
MSH2P43246 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH2P43246 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
MSH2P43246 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH2P43246 SYT6-210ENST00000641643 1587 ntBASIC21.19■□□□□ 0.98
MSH2P43246 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH2P43246 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH2P43246 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH2P43246 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC21.18■□□□□ 0.98
MSH2P43246 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.18■□□□□ 0.98
MSH2P43246 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH2P43246 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH2P43246 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC21.18■□□□□ 0.98
MSH2P43246 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
MSH2P43246 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH2P43246 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MSH2P43246 SERBP1P1-201ENST00000396021 1160 ntBASIC21.18■□□□□ 0.98
MSH2P43246 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
MSH2P43246 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MSH2P43246 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
MSH2P43246 AC131281.2-201ENST00000520478 145 ntBASIC21.18■□□□□ 0.98
MSH2P43246 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21.18■□□□□ 0.98
MSH2P43246 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.18■□□□□ 0.98
MSH2P43246 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC21.18■□□□□ 0.98
MSH2P43246 MIR4466-201ENST00000606121 54 ntBASIC21.18■□□□□ 0.98
MSH2P43246 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC21.18■□□□□ 0.98
MSH2P43246 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH2P43246 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC21.18■□□□□ 0.98
MSH2P43246 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21.18■□□□□ 0.98
MSH2P43246 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH2P43246 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH2P43246 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH2P43246 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
MSH2P43246 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
MSH2P43246 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
MSH2P43246 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH2P43246 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH2P43246 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH2P43246 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.17■□□□□ 0.98
MSH2P43246 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH2P43246 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH2P43246 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH2P43246 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSH2P43246 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC21.16■□□□□ 0.98
MSH2P43246 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
MSH2P43246 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
MSH2P43246 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC21.16■□□□□ 0.98
MSH2P43246 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.16■□□□□ 0.98
MSH2P43246 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC21.16■□□□□ 0.98
MSH2P43246 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
MSH2P43246 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSH2P43246 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
MSH2P43246 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
MSH2P43246 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSH2P43246 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSH2P43246 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSH2P43246 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21.16■□□□□ 0.98
MSH2P43246 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.16■□□□□ 0.98
MSH2P43246 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC21.16■□□□□ 0.98
MSH2P43246 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.15■□□□□ 0.98
MSH2P43246 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSH2P43246 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.15■□□□□ 0.98
MSH2P43246 GABARAPL3-202ENST00000624044 1851 ntBASIC21.15■□□□□ 0.98
MSH2P43246 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSH2P43246 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
MSH2P43246 NARF-205ENST00000412079 1760 ntTSL 5 BASIC21.15■□□□□ 0.98
MSH2P43246 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSH2P43246 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
MSH2P43246 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
MSH2P43246 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
MSH2P43246 SLC47A1P1-202ENST00000449666 945 ntBASIC21.15■□□□□ 0.98
MSH2P43246 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC21.15■□□□□ 0.98
MSH2P43246 DUX4L19-201ENST00000557448 1267 ntBASIC21.15■□□□□ 0.98
MSH2P43246 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.15■□□□□ 0.98
MSH2P43246 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.15■□□□□ 0.98
MSH2P43246 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC21.15■□□□□ 0.98
MSH2P43246 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC21.15■□□□□ 0.98
MSH2P43246 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
MSH2P43246 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSH2P43246 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSH2P43246 PLK5-205ENST00000642079 1969 ntBASIC21.15■□□□□ 0.98
MSH2P43246 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
MSH2P43246 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC21.15■□□□□ 0.98
MSH2P43246 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
MSH2P43246 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
MSH2P43246 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
MSH2P43246 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
MSH2P43246 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
MSH2P43246 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC21.14■□□□□ 0.97
MSH2P43246 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
MSH2P43246 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
MSH2P43246 AC136469.2-201ENST00000623944 1028 ntBASIC21.14■□□□□ 0.97
MSH2P43246 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms