Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CIITAP33076 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
CIITAP33076 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
CIITAP33076 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC23.66■■□□□ 1.38
CIITAP33076 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
CIITAP33076 CD44-222ENST00000526025 1052 ntTSL 2 BASIC23.66■■□□□ 1.38
CIITAP33076 PLLP-204ENST00000569059 665 ntTSL 3 BASIC23.66■■□□□ 1.38
CIITAP33076 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
CIITAP33076 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CIITAP33076 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC23.66■■□□□ 1.38
CIITAP33076 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
CIITAP33076 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CIITAP33076 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CIITAP33076 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CIITAP33076 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC23.66■■□□□ 1.38
CIITAP33076 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC23.65■■□□□ 1.38
CIITAP33076 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CIITAP33076 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
CIITAP33076 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC23.65■■□□□ 1.38
CIITAP33076 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC23.65■■□□□ 1.38
CIITAP33076 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC23.65■■□□□ 1.38
CIITAP33076 AC245052.3-201ENST00000450182 901 ntBASIC23.65■■□□□ 1.38
CIITAP33076 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC23.65■■□□□ 1.38
CIITAP33076 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC23.65■■□□□ 1.38
CIITAP33076 AC068338.2-201ENST00000563278 1430 ntBASIC23.65■■□□□ 1.38
CIITAP33076 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
CIITAP33076 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC23.64■■□□□ 1.38
CIITAP33076 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC23.64■■□□□ 1.38
CIITAP33076 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC23.64■■□□□ 1.38
CIITAP33076 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
CIITAP33076 AC091799.1-201ENST00000422823 811 ntBASIC23.64■■□□□ 1.37
CIITAP33076 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC23.64■■□□□ 1.37
CIITAP33076 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC23.64■■□□□ 1.37
CIITAP33076 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC23.64■■□□□ 1.37
CIITAP33076 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC23.64■■□□□ 1.37
CIITAP33076 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
CIITAP33076 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
CIITAP33076 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC23.63■■□□□ 1.37
CIITAP33076 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC23.63■■□□□ 1.37
CIITAP33076 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
CIITAP33076 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
CIITAP33076 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC23.63■■□□□ 1.37
CIITAP33076 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
CIITAP33076 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
CIITAP33076 APTR-203ENST00000430801 583 ntTSL 5 BASIC23.63■■□□□ 1.37
CIITAP33076 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
CIITAP33076 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
CIITAP33076 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
CIITAP33076 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC23.63■■□□□ 1.37
CIITAP33076 AL050303.2-201ENST00000619798 666 ntBASIC23.63■■□□□ 1.37
CIITAP33076 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC23.63■■□□□ 1.37
CIITAP33076 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
CIITAP33076 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC23.63■■□□□ 1.37
CIITAP33076 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
CIITAP33076 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC23.62■■□□□ 1.37
CIITAP33076 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC23.62■■□□□ 1.37
CIITAP33076 PARN-205ENST00000539279 1557 ntTSL 2 BASIC23.62■■□□□ 1.37
CIITAP33076 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
CIITAP33076 BMP1-204ENST00000397814 836 ntTSL 4 BASIC23.62■■□□□ 1.37
CIITAP33076 PPP1R14BP3-201ENST00000509033 445 ntBASIC23.62■■□□□ 1.37
CIITAP33076 AL162412.1-201ENST00000567129 965 ntBASIC23.62■■□□□ 1.37
CIITAP33076 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
CIITAP33076 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CIITAP33076 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
CIITAP33076 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
CIITAP33076 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
CIITAP33076 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
CIITAP33076 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CIITAP33076 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC23.61■■□□□ 1.37
CIITAP33076 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC23.61■■□□□ 1.37
CIITAP33076 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
CIITAP33076 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
CIITAP33076 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC23.61■■□□□ 1.37
CIITAP33076 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CIITAP33076 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CIITAP33076 AC005181.1-201ENST00000604782 1256 ntBASIC23.61■■□□□ 1.37
CIITAP33076 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CIITAP33076 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
CIITAP33076 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC23.61■■□□□ 1.37
CIITAP33076 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC23.61■■□□□ 1.37
CIITAP33076 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CIITAP33076 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CIITAP33076 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CIITAP33076 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CIITAP33076 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CIITAP33076 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
CIITAP33076 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CIITAP33076 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CIITAP33076 WWC2-AS2-201ENST00000578387 2183 ntBASIC23.6■■□□□ 1.37
CIITAP33076 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC23.6■■□□□ 1.37
CIITAP33076 MIR663A-201ENST00000385250 93 ntBASIC23.6■■□□□ 1.37
CIITAP33076 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC23.6■■□□□ 1.37
CIITAP33076 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC23.6■■□□□ 1.37
CIITAP33076 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC23.6■■□□□ 1.37
CIITAP33076 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CIITAP33076 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CIITAP33076 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CIITAP33076 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
CIITAP33076 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CIITAP33076 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms