Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC26.69■■□□□ 1.86
COL5A3P25940 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
COL5A3P25940 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC26.69■■□□□ 1.86
COL5A3P25940 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC26.69■■□□□ 1.86
COL5A3P25940 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
COL5A3P25940 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
COL5A3P25940 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC26.69■■□□□ 1.86
COL5A3P25940 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC26.69■■□□□ 1.86
COL5A3P25940 PTPA-214ENST00000423100 988 ntTSL 2 BASIC26.69■■□□□ 1.86
COL5A3P25940 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
COL5A3P25940 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC26.69■■□□□ 1.86
COL5A3P25940 AL589743.5-201ENST00000616611 1050 ntBASIC26.68■■□□□ 1.86
COL5A3P25940 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC26.68■■□□□ 1.86
COL5A3P25940 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC26.68■■□□□ 1.86
COL5A3P25940 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC26.68■■□□□ 1.86
COL5A3P25940 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
COL5A3P25940 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC26.68■■□□□ 1.86
COL5A3P25940 AC012618.2-201ENST00000428058 849 ntBASIC26.68■■□□□ 1.86
COL5A3P25940 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC26.68■■□□□ 1.86
COL5A3P25940 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC26.68■■□□□ 1.86
COL5A3P25940 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC26.68■■□□□ 1.86
COL5A3P25940 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
COL5A3P25940 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC26.67■■□□□ 1.86
COL5A3P25940 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
COL5A3P25940 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC26.67■■□□□ 1.86
COL5A3P25940 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC26.67■■□□□ 1.86
COL5A3P25940 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC26.67■■□□□ 1.86
COL5A3P25940 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
COL5A3P25940 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC26.67■■□□□ 1.86
COL5A3P25940 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
COL5A3P25940 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC26.67■■□□□ 1.86
COL5A3P25940 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC26.67■■□□□ 1.86
COL5A3P25940 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC26.67■■□□□ 1.86
COL5A3P25940 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC26.66■■□□□ 1.86
COL5A3P25940 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
COL5A3P25940 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
COL5A3P25940 GCK-205ENST00000437084 1385 ntTSL 5 BASIC26.66■■□□□ 1.86
COL5A3P25940 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC26.66■■□□□ 1.86
COL5A3P25940 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC26.66■■□□□ 1.86
COL5A3P25940 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC26.66■■□□□ 1.86
COL5A3P25940 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC26.66■■□□□ 1.86
COL5A3P25940 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC26.66■■□□□ 1.86
COL5A3P25940 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
COL5A3P25940 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
COL5A3P25940 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
COL5A3P25940 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC26.66■■□□□ 1.86
COL5A3P25940 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
COL5A3P25940 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
COL5A3P25940 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC26.65■■□□□ 1.86
COL5A3P25940 KRT17P3-201ENST00000420566 1262 ntBASIC26.65■■□□□ 1.86
COL5A3P25940 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC26.65■■□□□ 1.86
COL5A3P25940 AC073912.3-201ENST00000624414 853 ntBASIC26.65■■□□□ 1.86
COL5A3P25940 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC26.65■■□□□ 1.86
COL5A3P25940 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC26.65■■□□□ 1.86
COL5A3P25940 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
COL5A3P25940 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC26.65■■□□□ 1.86
COL5A3P25940 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
COL5A3P25940 AC068473.5-201ENST00000616428 2072 ntBASIC26.65■■□□□ 1.86
COL5A3P25940 POM121L13P-201ENST00000422362 380 ntBASIC26.65■■□□□ 1.86
COL5A3P25940 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC26.65■■□□□ 1.86
COL5A3P25940 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC26.65■■□□□ 1.86
COL5A3P25940 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC26.64■■□□□ 1.86
COL5A3P25940 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC26.64■■□□□ 1.85
COL5A3P25940 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
COL5A3P25940 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC26.64■■□□□ 1.85
COL5A3P25940 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC26.64■■□□□ 1.85
COL5A3P25940 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC26.64■■□□□ 1.85
COL5A3P25940 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC26.63■■□□□ 1.85
COL5A3P25940 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
COL5A3P25940 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC26.63■■□□□ 1.85
COL5A3P25940 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
COL5A3P25940 MIR718-201ENST00000390190 70 ntBASIC26.63■■□□□ 1.85
COL5A3P25940 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
COL5A3P25940 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC26.63■■□□□ 1.85
COL5A3P25940 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC26.63■■□□□ 1.85
COL5A3P25940 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC26.63■■□□□ 1.85
COL5A3P25940 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC26.63■■□□□ 1.85
COL5A3P25940 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
COL5A3P25940 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC26.63■■□□□ 1.85
COL5A3P25940 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC26.63■■□□□ 1.85
COL5A3P25940 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
COL5A3P25940 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC26.62■■□□□ 1.85
COL5A3P25940 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC26.62■■□□□ 1.85
COL5A3P25940 CYP21A1P-202ENST00000354927 1481 ntBASIC26.62■■□□□ 1.85
COL5A3P25940 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
COL5A3P25940 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC26.62■■□□□ 1.85
COL5A3P25940 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
COL5A3P25940 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC26.62■■□□□ 1.85
COL5A3P25940 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC26.62■■□□□ 1.85
COL5A3P25940 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC26.62■■□□□ 1.85
COL5A3P25940 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC26.62■■□□□ 1.85
COL5A3P25940 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC26.62■■□□□ 1.85
COL5A3P25940 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC26.62■■□□□ 1.85
COL5A3P25940 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC26.61■■□□□ 1.85
COL5A3P25940 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC26.61■■□□□ 1.85
COL5A3P25940 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC26.61■■□□□ 1.85
COL5A3P25940 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
COL5A3P25940 SNORA78-201ENST00000459373 127 ntBASIC26.61■■□□□ 1.85
COL5A3P25940 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC26.61■■□□□ 1.85
COL5A3P25940 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC26.61■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms