Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
XRCC1P18887 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.8■□□□□ 0.92
XRCC1P18887 DLX3-202ENST00000512495 834 ntTSL 2 BASIC20.8■□□□□ 0.92
XRCC1P18887 AC104187.1-201ENST00000607510 612 ntBASIC20.8■□□□□ 0.92
XRCC1P18887 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
XRCC1P18887 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.8■□□□□ 0.92
XRCC1P18887 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
XRCC1P18887 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.8■□□□□ 0.92
XRCC1P18887 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
XRCC1P18887 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
XRCC1P18887 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
XRCC1P18887 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
XRCC1P18887 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
XRCC1P18887 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
XRCC1P18887 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.79■□□□□ 0.92
XRCC1P18887 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.79■□□□□ 0.92
XRCC1P18887 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
XRCC1P18887 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
XRCC1P18887 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
XRCC1P18887 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
XRCC1P18887 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
XRCC1P18887 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.78■□□□□ 0.92
XRCC1P18887 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
XRCC1P18887 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
XRCC1P18887 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
XRCC1P18887 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.78■□□□□ 0.92
XRCC1P18887 AL121603.2-201ENST00000557373 2117 ntBASIC20.78■□□□□ 0.92
XRCC1P18887 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
XRCC1P18887 AF106564.1-201ENST00000607058 2553 ntBASIC20.78■□□□□ 0.92
XRCC1P18887 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
XRCC1P18887 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
XRCC1P18887 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
XRCC1P18887 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.78■□□□□ 0.92
XRCC1P18887 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
XRCC1P18887 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.78■□□□□ 0.92
XRCC1P18887 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
XRCC1P18887 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
XRCC1P18887 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
XRCC1P18887 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
XRCC1P18887 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
XRCC1P18887 KRT18P11-201ENST00000435214 1283 ntBASIC20.78■□□□□ 0.92
XRCC1P18887 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.78■□□□□ 0.92
XRCC1P18887 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
XRCC1P18887 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.78■□□□□ 0.92
XRCC1P18887 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
XRCC1P18887 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.77■□□□□ 0.92
XRCC1P18887 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.77■□□□□ 0.92
XRCC1P18887 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
XRCC1P18887 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
XRCC1P18887 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
XRCC1P18887 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.77■□□□□ 0.92
XRCC1P18887 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.77■□□□□ 0.92
XRCC1P18887 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.77■□□□□ 0.92
XRCC1P18887 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
XRCC1P18887 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.77■□□□□ 0.92
XRCC1P18887 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.77■□□□□ 0.92
XRCC1P18887 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
XRCC1P18887 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
XRCC1P18887 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.77■□□□□ 0.91
XRCC1P18887 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
XRCC1P18887 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
XRCC1P18887 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
XRCC1P18887 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
XRCC1P18887 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
XRCC1P18887 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
XRCC1P18887 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
XRCC1P18887 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
XRCC1P18887 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.76■□□□□ 0.91
XRCC1P18887 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.76■□□□□ 0.91
XRCC1P18887 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.76■□□□□ 0.91
XRCC1P18887 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
XRCC1P18887 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
XRCC1P18887 AC092667.1-201ENST00000434301 2586 ntBASIC20.76■□□□□ 0.91
XRCC1P18887 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.76■□□□□ 0.91
XRCC1P18887 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.75■□□□□ 0.91
XRCC1P18887 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.75■□□□□ 0.91
XRCC1P18887 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
XRCC1P18887 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
XRCC1P18887 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.75■□□□□ 0.91
XRCC1P18887 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
XRCC1P18887 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.75■□□□□ 0.91
XRCC1P18887 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.75■□□□□ 0.91
XRCC1P18887 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
XRCC1P18887 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
XRCC1P18887 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
XRCC1P18887 AC090192.1-201ENST00000517740 490 ntBASIC20.75■□□□□ 0.91
XRCC1P18887 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
XRCC1P18887 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
XRCC1P18887 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
XRCC1P18887 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
XRCC1P18887 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
XRCC1P18887 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
XRCC1P18887 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.75■□□□□ 0.91
XRCC1P18887 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
XRCC1P18887 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
XRCC1P18887 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
XRCC1P18887 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
XRCC1P18887 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.74■□□□□ 0.91
XRCC1P18887 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
XRCC1P18887 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms