Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CXCL1P09341 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CXCL1P09341 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CXCL1P09341 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC16.19■□□□□ 0.18
CXCL1P09341 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CXCL1P09341 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC16.19■□□□□ 0.18
CXCL1P09341 FP325331.1-202ENST00000623531 1380 ntBASIC16.19■□□□□ 0.18
CXCL1P09341 IDNK-201ENST00000376417 511 ntTSL 5 BASIC16.19■□□□□ 0.18
CXCL1P09341 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CXCL1P09341 MBP-237ENST00000579129 1052 ntTSL 5 BASIC16.19■□□□□ 0.18
CXCL1P09341 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC16.19■□□□□ 0.18
CXCL1P09341 U85056.1-201ENST00000616429 682 ntBASIC16.19■□□□□ 0.18
CXCL1P09341 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CXCL1P09341 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CXCL1P09341 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC16.19■□□□□ 0.18
CXCL1P09341 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CXCL1P09341 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CXCL1P09341 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CXCL1P09341 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CXCL1P09341 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CXCL1P09341 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC16.18■□□□□ 0.18
CXCL1P09341 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CXCL1P09341 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CXCL1P09341 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
CXCL1P09341 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CXCL1P09341 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC16.18■□□□□ 0.18
CXCL1P09341 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CXCL1P09341 USP39-204ENST00000409766 2033 ntTSL 2 BASIC16.18■□□□□ 0.18
CXCL1P09341 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CXCL1P09341 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CXCL1P09341 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CXCL1P09341 RARRES2P2-201ENST00000394842 485 ntBASIC16.18■□□□□ 0.18
CXCL1P09341 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CXCL1P09341 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CXCL1P09341 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC16.18■□□□□ 0.18
CXCL1P09341 AC074183.2-201ENST00000623112 922 ntBASIC16.18■□□□□ 0.18
CXCL1P09341 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
CXCL1P09341 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC16.18■□□□□ 0.18
CXCL1P09341 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CXCL1P09341 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC16.18■□□□□ 0.18
CXCL1P09341 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC16.18■□□□□ 0.18
CXCL1P09341 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
CXCL1P09341 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CXCL1P09341 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CXCL1P09341 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CXCL1P09341 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC16.18■□□□□ 0.18
CXCL1P09341 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CXCL1P09341 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CXCL1P09341 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CXCL1P09341 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL1P09341 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC16.17■□□□□ 0.18
CXCL1P09341 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL1P09341 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL1P09341 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC16.17■□□□□ 0.18
CXCL1P09341 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC16.17■□□□□ 0.18
CXCL1P09341 REST-206ENST00000612429 1376 ntTSL 5 BASIC16.17■□□□□ 0.18
CXCL1P09341 REST-207ENST00000616975 1370 ntTSL 5 BASIC16.17■□□□□ 0.18
CXCL1P09341 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL1P09341 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL1P09341 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC16.17■□□□□ 0.18
CXCL1P09341 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL1P09341 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL1P09341 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL1P09341 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC16.17■□□□□ 0.18
CXCL1P09341 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC16.17■□□□□ 0.18
CXCL1P09341 AC027702.1-201ENST00000563810 1770 ntBASIC16.17■□□□□ 0.18
CXCL1P09341 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL1P09341 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC16.17■□□□□ 0.18
CXCL1P09341 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL1P09341 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL1P09341 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
CXCL1P09341 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
CXCL1P09341 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CXCL1P09341 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.18
CXCL1P09341 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CXCL1P09341 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CXCL1P09341 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CXCL1P09341 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CXCL1P09341 AR-207ENST00000612010 3896 ntTSL 5 BASIC16.16■□□□□ 0.18
CXCL1P09341 AC005332.8-201ENST00000622750 2735 ntBASIC16.16■□□□□ 0.18
CXCL1P09341 KRT18P60-201ENST00000312876 1297 ntBASIC16.16■□□□□ 0.18
CXCL1P09341 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CXCL1P09341 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
CXCL1P09341 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC16.16■□□□□ 0.18
CXCL1P09341 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CXCL1P09341 LTB4R2-202ENST00000528054 3092 ntBASIC16.16■□□□□ 0.18
CXCL1P09341 LINC01529-204ENST00000636474 1715 ntBASIC16.16■□□□□ 0.18
CXCL1P09341 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC16.16■□□□□ 0.18
CXCL1P09341 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CXCL1P09341 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CXCL1P09341 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CXCL1P09341 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CXCL1P09341 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC16.15■□□□□ 0.18
CXCL1P09341 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CXCL1P09341 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CXCL1P09341 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC16.15■□□□□ 0.18
CXCL1P09341 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CXCL1P09341 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC16.15■□□□□ 0.18
CXCL1P09341 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CXCL1P09341 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms