Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.2■□□□□ 0.82
CLDN9O95484 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN9O95484 AC027612.3-201ENST00000413684 1047 ntBASIC20.2■□□□□ 0.82
CLDN9O95484 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN9O95484 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.2■□□□□ 0.82
CLDN9O95484 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.2■□□□□ 0.82
CLDN9O95484 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN9O95484 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN9O95484 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
CLDN9O95484 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.2■□□□□ 0.82
CLDN9O95484 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.19■□□□□ 0.82
CLDN9O95484 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLDN9O95484 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.19■□□□□ 0.82
CLDN9O95484 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
CLDN9O95484 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLDN9O95484 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLDN9O95484 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CLDN9O95484 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLDN9O95484 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CLDN9O95484 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.19■□□□□ 0.82
CLDN9O95484 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.19■□□□□ 0.82
CLDN9O95484 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
CLDN9O95484 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CLDN9O95484 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
CLDN9O95484 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN9O95484 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.18■□□□□ 0.82
CLDN9O95484 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN9O95484 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN9O95484 KRT87P-202ENST00000534226 1464 ntBASIC20.18■□□□□ 0.82
CLDN9O95484 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN9O95484 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN9O95484 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN9O95484 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
CLDN9O95484 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN9O95484 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.18■□□□□ 0.82
CLDN9O95484 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN9O95484 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.18■□□□□ 0.82
CLDN9O95484 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.18■□□□□ 0.82
CLDN9O95484 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.18■□□□□ 0.82
CLDN9O95484 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN9O95484 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
CLDN9O95484 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CLDN9O95484 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN9O95484 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN9O95484 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN9O95484 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN9O95484 AP004607.4-201ENST00000530158 1459 ntBASIC20.18■□□□□ 0.82
CLDN9O95484 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN9O95484 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
CLDN9O95484 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.17■□□□□ 0.82
CLDN9O95484 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.17■□□□□ 0.82
CLDN9O95484 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.17■□□□□ 0.82
CLDN9O95484 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN9O95484 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.17■□□□□ 0.82
CLDN9O95484 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.17■□□□□ 0.82
CLDN9O95484 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN9O95484 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN9O95484 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CLDN9O95484 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN9O95484 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN9O95484 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.17■□□□□ 0.82
CLDN9O95484 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.16■□□□□ 0.82
CLDN9O95484 AC006128.1-201ENST00000624704 1661 ntBASIC20.16■□□□□ 0.82
CLDN9O95484 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.16■□□□□ 0.82
CLDN9O95484 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN9O95484 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN9O95484 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN9O95484 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN9O95484 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN9O95484 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CLDN9O95484 AK1-201ENST00000223836 736 ntTSL 3 BASIC20.16■□□□□ 0.82
CLDN9O95484 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CLDN9O95484 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CLDN9O95484 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN9O95484 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.16■□□□□ 0.82
CLDN9O95484 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN9O95484 AC061975.6-201ENST00000579045 1553 ntBASIC20.16■□□□□ 0.82
CLDN9O95484 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
CLDN9O95484 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.16■□□□□ 0.82
CLDN9O95484 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN9O95484 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN9O95484 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.15■□□□□ 0.82
CLDN9O95484 PLK5-205ENST00000642079 1969 ntBASIC20.15■□□□□ 0.82
CLDN9O95484 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLDN9O95484 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLDN9O95484 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CLDN9O95484 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLDN9O95484 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.15■□□□□ 0.82
CLDN9O95484 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLDN9O95484 AC008175.2-201ENST00000612840 297 ntBASIC20.15■□□□□ 0.82
CLDN9O95484 LINC02228-203ENST00000641970 1355 ntBASIC20.15■□□□□ 0.82
CLDN9O95484 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLDN9O95484 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLDN9O95484 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.15■□□□□ 0.82
CLDN9O95484 AC121338.2-201ENST00000622535 1744 ntBASIC20.15■□□□□ 0.82
CLDN9O95484 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CLDN9O95484 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
CLDN9O95484 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLDN9O95484 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.15■□□□□ 0.82
CLDN9O95484 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms