Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC19.68■□□□□ 0.74
LDB3O75112 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.68■□□□□ 0.74
LDB3O75112 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.68■□□□□ 0.74
LDB3O75112 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.68■□□□□ 0.74
LDB3O75112 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
LDB3O75112 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.68■□□□□ 0.74
LDB3O75112 GLI3-203ENST00000437480 451 ntTSL 2 BASIC19.68■□□□□ 0.74
LDB3O75112 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.68■□□□□ 0.74
LDB3O75112 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LDB3O75112 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
LDB3O75112 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LDB3O75112 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
LDB3O75112 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LDB3O75112 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LDB3O75112 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.67■□□□□ 0.74
LDB3O75112 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LDB3O75112 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LDB3O75112 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LDB3O75112 AL137060.1-201ENST00000618151 2648 ntBASIC19.67■□□□□ 0.74
LDB3O75112 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
LDB3O75112 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
LDB3O75112 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.67■□□□□ 0.74
LDB3O75112 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.67■□□□□ 0.74
LDB3O75112 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.67■□□□□ 0.74
LDB3O75112 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
LDB3O75112 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LDB3O75112 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
LDB3O75112 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
LDB3O75112 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LDB3O75112 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
LDB3O75112 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.67■□□□□ 0.74
LDB3O75112 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
LDB3O75112 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.67■□□□□ 0.74
LDB3O75112 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.67■□□□□ 0.74
LDB3O75112 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LDB3O75112 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LDB3O75112 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
LDB3O75112 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LDB3O75112 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LDB3O75112 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
LDB3O75112 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LDB3O75112 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LDB3O75112 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.66■□□□□ 0.74
LDB3O75112 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.66■□□□□ 0.74
LDB3O75112 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LDB3O75112 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LDB3O75112 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LDB3O75112 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
LDB3O75112 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
LDB3O75112 KRT16P2-201ENST00000414673 1423 ntBASIC19.66■□□□□ 0.74
LDB3O75112 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LDB3O75112 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LDB3O75112 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LDB3O75112 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LDB3O75112 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.65■□□□□ 0.74
LDB3O75112 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LDB3O75112 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LDB3O75112 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
LDB3O75112 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LDB3O75112 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.65■□□□□ 0.74
LDB3O75112 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
LDB3O75112 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
LDB3O75112 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
LDB3O75112 AC006015.1-201ENST00000429970 570 ntBASIC19.65■□□□□ 0.74
LDB3O75112 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.65■□□□□ 0.74
LDB3O75112 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.65■□□□□ 0.74
LDB3O75112 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.65■□□□□ 0.74
LDB3O75112 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC19.65■□□□□ 0.74
LDB3O75112 AC092437.1-201ENST00000624794 1048 ntBASIC19.65■□□□□ 0.74
LDB3O75112 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.65■□□□□ 0.74
LDB3O75112 MYCNOS-205ENST00000641950 531 ntBASIC19.65■□□□□ 0.74
LDB3O75112 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LDB3O75112 AC005229.4-201ENST00000610085 2198 ntBASIC19.65■□□□□ 0.74
LDB3O75112 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.65■□□□□ 0.74
LDB3O75112 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
LDB3O75112 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LDB3O75112 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LDB3O75112 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.65■□□□□ 0.74
LDB3O75112 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LDB3O75112 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LDB3O75112 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LDB3O75112 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
LDB3O75112 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.74
LDB3O75112 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.74
LDB3O75112 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
LDB3O75112 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
LDB3O75112 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LDB3O75112 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LDB3O75112 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.64■□□□□ 0.73
LDB3O75112 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.64■□□□□ 0.73
LDB3O75112 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.64■□□□□ 0.73
LDB3O75112 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.64■□□□□ 0.73
LDB3O75112 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.64■□□□□ 0.73
LDB3O75112 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LDB3O75112 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.64■□□□□ 0.73
LDB3O75112 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
LDB3O75112 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
LDB3O75112 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC19.63■□□□□ 0.73
LDB3O75112 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
LDB3O75112 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms