Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VCX3AQ9NNX9 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC19.55■□□□□ 0.72
VCX3AQ9NNX9 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VCX3AQ9NNX9 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
VCX3AQ9NNX9 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
VCX3AQ9NNX9 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.55■□□□□ 0.72
VCX3AQ9NNX9 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC19.55■□□□□ 0.72
VCX3AQ9NNX9 AP005212.1-201ENST00000581547 1997 ntBASIC19.55■□□□□ 0.72
VCX3AQ9NNX9 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VCX3AQ9NNX9 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
VCX3AQ9NNX9 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC19.55■□□□□ 0.72
VCX3AQ9NNX9 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VCX3AQ9NNX9 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCX3AQ9NNX9 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC19.54■□□□□ 0.72
VCX3AQ9NNX9 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCX3AQ9NNX9 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.54■□□□□ 0.72
VCX3AQ9NNX9 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCX3AQ9NNX9 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCX3AQ9NNX9 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC19.54■□□□□ 0.72
VCX3AQ9NNX9 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCX3AQ9NNX9 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCX3AQ9NNX9 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCX3AQ9NNX9 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VCX3AQ9NNX9 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCX3AQ9NNX9 AC004408.2-201ENST00000623613 2777 ntBASIC19.54■□□□□ 0.72
VCX3AQ9NNX9 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VCX3AQ9NNX9 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
VCX3AQ9NNX9 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCX3AQ9NNX9 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
VCX3AQ9NNX9 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VCX3AQ9NNX9 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC19.53■□□□□ 0.72
VCX3AQ9NNX9 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VCX3AQ9NNX9 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.53■□□□□ 0.72
VCX3AQ9NNX9 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
VCX3AQ9NNX9 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VCX3AQ9NNX9 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
VCX3AQ9NNX9 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VCX3AQ9NNX9 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
VCX3AQ9NNX9 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
VCX3AQ9NNX9 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VCX3AQ9NNX9 AC104564.3-201ENST00000582367 638 ntBASIC19.53■□□□□ 0.72
VCX3AQ9NNX9 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VCX3AQ9NNX9 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VCX3AQ9NNX9 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VCX3AQ9NNX9 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VCX3AQ9NNX9 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
VCX3AQ9NNX9 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
VCX3AQ9NNX9 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
VCX3AQ9NNX9 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VCX3AQ9NNX9 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VCX3AQ9NNX9 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
VCX3AQ9NNX9 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
VCX3AQ9NNX9 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VCX3AQ9NNX9 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
VCX3AQ9NNX9 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VCX3AQ9NNX9 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VCX3AQ9NNX9 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.52■□□□□ 0.72
VCX3AQ9NNX9 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VCX3AQ9NNX9 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VCX3AQ9NNX9 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VCX3AQ9NNX9 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC19.52■□□□□ 0.72
VCX3AQ9NNX9 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VCX3AQ9NNX9 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
VCX3AQ9NNX9 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.52■□□□□ 0.72
VCX3AQ9NNX9 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.72
VCX3AQ9NNX9 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
VCX3AQ9NNX9 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VCX3AQ9NNX9 LBH-205ENST00000407930 756 ntTSL 2 BASIC19.52■□□□□ 0.72
VCX3AQ9NNX9 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
VCX3AQ9NNX9 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC19.52■□□□□ 0.72
VCX3AQ9NNX9 CA15P2-201ENST00000611168 834 ntBASIC19.52■□□□□ 0.72
VCX3AQ9NNX9 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
VCX3AQ9NNX9 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VCX3AQ9NNX9 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.52■□□□□ 0.72
VCX3AQ9NNX9 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
VCX3AQ9NNX9 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
VCX3AQ9NNX9 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
VCX3AQ9NNX9 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
VCX3AQ9NNX9 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.52■□□□□ 0.71
VCX3AQ9NNX9 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.52■□□□□ 0.71
VCX3AQ9NNX9 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
VCX3AQ9NNX9 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
VCX3AQ9NNX9 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
VCX3AQ9NNX9 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.52■□□□□ 0.71
VCX3AQ9NNX9 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
VCX3AQ9NNX9 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
VCX3AQ9NNX9 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCX3AQ9NNX9 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCX3AQ9NNX9 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCX3AQ9NNX9 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VCX3AQ9NNX9 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCX3AQ9NNX9 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
VCX3AQ9NNX9 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCX3AQ9NNX9 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCX3AQ9NNX9 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCX3AQ9NNX9 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCX3AQ9NNX9 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCX3AQ9NNX9 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VCX3AQ9NNX9 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
VCX3AQ9NNX9 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms