Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.36■□□□□ 0.85
CCDC28BQ9BUN5 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.36■□□□□ 0.85
CCDC28BQ9BUN5 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC28BQ9BUN5 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC28BQ9BUN5 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC28BQ9BUN5 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
CCDC28BQ9BUN5 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.36■□□□□ 0.85
CCDC28BQ9BUN5 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC28BQ9BUN5 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC28BQ9BUN5 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.36■□□□□ 0.85
CCDC28BQ9BUN5 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.35■□□□□ 0.85
CCDC28BQ9BUN5 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC28BQ9BUN5 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC28BQ9BUN5 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
CCDC28BQ9BUN5 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.35■□□□□ 0.85
CCDC28BQ9BUN5 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
CCDC28BQ9BUN5 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.35■□□□□ 0.85
CCDC28BQ9BUN5 AC009299.2-201ENST00000482477 511 ntBASIC20.35■□□□□ 0.85
CCDC28BQ9BUN5 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
CCDC28BQ9BUN5 AC092171.4-201ENST00000609130 632 ntBASIC20.35■□□□□ 0.85
CCDC28BQ9BUN5 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC28BQ9BUN5 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC28BQ9BUN5 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC28BQ9BUN5 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC28BQ9BUN5 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
CCDC28BQ9BUN5 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC28BQ9BUN5 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC28BQ9BUN5 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
CCDC28BQ9BUN5 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.34■□□□□ 0.85
CCDC28BQ9BUN5 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
CCDC28BQ9BUN5 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC28BQ9BUN5 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
CCDC28BQ9BUN5 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC28BQ9BUN5 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
CCDC28BQ9BUN5 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC28BQ9BUN5 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC28BQ9BUN5 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
CCDC28BQ9BUN5 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.34■□□□□ 0.85
CCDC28BQ9BUN5 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC28BQ9BUN5 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC28BQ9BUN5 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC28BQ9BUN5 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.33■□□□□ 0.85
CCDC28BQ9BUN5 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC28BQ9BUN5 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.33■□□□□ 0.85
CCDC28BQ9BUN5 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC28BQ9BUN5 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.33■□□□□ 0.85
CCDC28BQ9BUN5 AP005435.1-201ENST00000529293 1178 ntBASIC20.33■□□□□ 0.85
CCDC28BQ9BUN5 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.33■□□□□ 0.85
CCDC28BQ9BUN5 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC28BQ9BUN5 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC28BQ9BUN5 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC28BQ9BUN5 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC28BQ9BUN5 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.33■□□□□ 0.84
CCDC28BQ9BUN5 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.33■□□□□ 0.84
CCDC28BQ9BUN5 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.33■□□□□ 0.84
CCDC28BQ9BUN5 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.33■□□□□ 0.84
CCDC28BQ9BUN5 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
CCDC28BQ9BUN5 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC28BQ9BUN5 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC28BQ9BUN5 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.32■□□□□ 0.84
CCDC28BQ9BUN5 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC28BQ9BUN5 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.32■□□□□ 0.84
CCDC28BQ9BUN5 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC28BQ9BUN5 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.32■□□□□ 0.84
CCDC28BQ9BUN5 AL356740.2-201ENST00000601559 647 ntBASIC20.32■□□□□ 0.84
CCDC28BQ9BUN5 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.32■□□□□ 0.84
CCDC28BQ9BUN5 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC28BQ9BUN5 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC28BQ9BUN5 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC28BQ9BUN5 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC28BQ9BUN5 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC28BQ9BUN5 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC28BQ9BUN5 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC28BQ9BUN5 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC28BQ9BUN5 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
CCDC28BQ9BUN5 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC20.31■□□□□ 0.84
CCDC28BQ9BUN5 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC28BQ9BUN5 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC28BQ9BUN5 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
CCDC28BQ9BUN5 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC28BQ9BUN5 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC28BQ9BUN5 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.31■□□□□ 0.84
CCDC28BQ9BUN5 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.31■□□□□ 0.84
CCDC28BQ9BUN5 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC28BQ9BUN5 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC28BQ9BUN5 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC28BQ9BUN5 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.31■□□□□ 0.84
CCDC28BQ9BUN5 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC28BQ9BUN5 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC28BQ9BUN5 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.31■□□□□ 0.84
CCDC28BQ9BUN5 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC28BQ9BUN5 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC28BQ9BUN5 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
CCDC28BQ9BUN5 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC28BQ9BUN5 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.3■□□□□ 0.84
CCDC28BQ9BUN5 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC28BQ9BUN5 AC121338.2-201ENST00000622535 1744 ntBASIC20.3■□□□□ 0.84
CCDC28BQ9BUN5 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC28BQ9BUN5 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC28BQ9BUN5 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms