Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC21.08■□□□□ 0.97
HDDC3Q8N4P3 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HDDC3Q8N4P3 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.97
HDDC3Q8N4P3 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.08■□□□□ 0.97
HDDC3Q8N4P3 PHB2-213ENST00000546111 858 ntTSL 2 BASIC21.08■□□□□ 0.97
HDDC3Q8N4P3 IRX5-204ENST00000560154 879 ntTSL 5 BASIC21.08■□□□□ 0.97
HDDC3Q8N4P3 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
HDDC3Q8N4P3 ARL16-209ENST00000573715 763 ntTSL 3 BASIC21.08■□□□□ 0.97
HDDC3Q8N4P3 ARL16-211ENST00000576135 694 ntTSL 3 BASIC21.08■□□□□ 0.97
HDDC3Q8N4P3 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HDDC3Q8N4P3 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.96
HDDC3Q8N4P3 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
HDDC3Q8N4P3 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
HDDC3Q8N4P3 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.08■□□□□ 0.96
HDDC3Q8N4P3 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.07■□□□□ 0.96
HDDC3Q8N4P3 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
HDDC3Q8N4P3 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HDDC3Q8N4P3 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HDDC3Q8N4P3 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC21.07■□□□□ 0.96
HDDC3Q8N4P3 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
HDDC3Q8N4P3 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HDDC3Q8N4P3 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
HDDC3Q8N4P3 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
HDDC3Q8N4P3 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
HDDC3Q8N4P3 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HDDC3Q8N4P3 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HDDC3Q8N4P3 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HDDC3Q8N4P3 AC093787.1-201ENST00000450396 207 ntBASIC21.07■□□□□ 0.96
HDDC3Q8N4P3 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.07■□□□□ 0.96
HDDC3Q8N4P3 AL591742.1-201ENST00000604433 565 ntBASIC21.07■□□□□ 0.96
HDDC3Q8N4P3 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.07■□□□□ 0.96
HDDC3Q8N4P3 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
HDDC3Q8N4P3 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HDDC3Q8N4P3 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.07■□□□□ 0.96
HDDC3Q8N4P3 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HDDC3Q8N4P3 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.06■□□□□ 0.96
HDDC3Q8N4P3 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
HDDC3Q8N4P3 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
HDDC3Q8N4P3 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
HDDC3Q8N4P3 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HDDC3Q8N4P3 RHEB-204ENST00000472642 900 ntTSL 3 BASIC21.06■□□□□ 0.96
HDDC3Q8N4P3 AC243732.1-201ENST00000612648 864 ntBASIC21.06■□□□□ 0.96
HDDC3Q8N4P3 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
HDDC3Q8N4P3 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC21.06■□□□□ 0.96
HDDC3Q8N4P3 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
HDDC3Q8N4P3 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
HDDC3Q8N4P3 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.06■□□□□ 0.96
HDDC3Q8N4P3 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
HDDC3Q8N4P3 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HDDC3Q8N4P3 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
HDDC3Q8N4P3 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.05■□□□□ 0.96
HDDC3Q8N4P3 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HDDC3Q8N4P3 PRORSD1P-201ENST00000295112 541 ntBASIC21.05■□□□□ 0.96
HDDC3Q8N4P3 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
HDDC3Q8N4P3 MIPEPP3-201ENST00000412105 444 ntBASIC21.05■□□□□ 0.96
HDDC3Q8N4P3 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HDDC3Q8N4P3 PPP1R14BP2-201ENST00000426284 444 ntBASIC21.05■□□□□ 0.96
HDDC3Q8N4P3 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC21.05■□□□□ 0.96
HDDC3Q8N4P3 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC21.05■□□□□ 0.96
HDDC3Q8N4P3 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC21.05■□□□□ 0.96
HDDC3Q8N4P3 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC21.05■□□□□ 0.96
HDDC3Q8N4P3 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HDDC3Q8N4P3 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
HDDC3Q8N4P3 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HDDC3Q8N4P3 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HDDC3Q8N4P3 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HDDC3Q8N4P3 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HDDC3Q8N4P3 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.04■□□□□ 0.96
HDDC3Q8N4P3 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC21.04■□□□□ 0.96
HDDC3Q8N4P3 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HDDC3Q8N4P3 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
HDDC3Q8N4P3 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HDDC3Q8N4P3 AL512625.2-201ENST00000417533 625 ntBASIC21.04■□□□□ 0.96
HDDC3Q8N4P3 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HDDC3Q8N4P3 MARS-234ENST00000630571 216 ntTSL 5 BASIC21.04■□□□□ 0.96
HDDC3Q8N4P3 MARS-235ENST00000630803 183 ntTSL 3 BASIC21.04■□□□□ 0.96
HDDC3Q8N4P3 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
HDDC3Q8N4P3 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
HDDC3Q8N4P3 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
HDDC3Q8N4P3 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.04■□□□□ 0.96
HDDC3Q8N4P3 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21.04■□□□□ 0.96
HDDC3Q8N4P3 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HDDC3Q8N4P3 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.04■□□□□ 0.96
HDDC3Q8N4P3 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
HDDC3Q8N4P3 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC21.03■□□□□ 0.96
HDDC3Q8N4P3 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
HDDC3Q8N4P3 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HDDC3Q8N4P3 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC21.03■□□□□ 0.96
HDDC3Q8N4P3 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
HDDC3Q8N4P3 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC21.03■□□□□ 0.96
HDDC3Q8N4P3 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC21.03■□□□□ 0.96
HDDC3Q8N4P3 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC21.03■□□□□ 0.96
HDDC3Q8N4P3 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.03■□□□□ 0.96
HDDC3Q8N4P3 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HDDC3Q8N4P3 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HDDC3Q8N4P3 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HDDC3Q8N4P3 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HDDC3Q8N4P3 C11orf96-202ENST00000528572 1834 ntBASIC21.02■□□□□ 0.96
HDDC3Q8N4P3 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HDDC3Q8N4P3 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms