Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
KRT39Q6A163 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC22.66■■□□□ 1.22
KRT39Q6A163 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
KRT39Q6A163 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
KRT39Q6A163 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC22.66■■□□□ 1.22
KRT39Q6A163 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC22.66■■□□□ 1.22
KRT39Q6A163 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
KRT39Q6A163 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
KRT39Q6A163 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC22.66■■□□□ 1.22
KRT39Q6A163 GALNS-213ENST00000569433 723 ntTSL 3 BASIC22.66■■□□□ 1.22
KRT39Q6A163 KRT18P61-201ENST00000585825 1298 ntBASIC22.66■■□□□ 1.22
KRT39Q6A163 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
KRT39Q6A163 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
KRT39Q6A163 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
KRT39Q6A163 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC22.66■■□□□ 1.22
KRT39Q6A163 AL049796.1-201ENST00000565336 1766 ntBASIC22.66■■□□□ 1.22
KRT39Q6A163 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC22.65■■□□□ 1.22
KRT39Q6A163 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
KRT39Q6A163 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
KRT39Q6A163 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
KRT39Q6A163 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
KRT39Q6A163 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC22.65■■□□□ 1.22
KRT39Q6A163 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
KRT39Q6A163 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
KRT39Q6A163 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC22.65■■□□□ 1.22
KRT39Q6A163 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC22.65■■□□□ 1.22
KRT39Q6A163 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC22.65■■□□□ 1.22
KRT39Q6A163 AP001160.3-201ENST00000601484 763 ntBASIC22.65■■□□□ 1.22
KRT39Q6A163 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
KRT39Q6A163 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
KRT39Q6A163 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
KRT39Q6A163 PALM-208ENST00000592155 2272 ntTSL 4 BASIC22.65■■□□□ 1.22
KRT39Q6A163 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC22.65■■□□□ 1.22
KRT39Q6A163 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC22.65■■□□□ 1.22
KRT39Q6A163 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
KRT39Q6A163 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.22
KRT39Q6A163 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC22.64■■□□□ 1.22
KRT39Q6A163 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
KRT39Q6A163 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
KRT39Q6A163 NAA20-201ENST00000310450 920 ntTSL 2 BASIC22.64■■□□□ 1.21
KRT39Q6A163 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC22.64■■□□□ 1.21
KRT39Q6A163 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC22.64■■□□□ 1.21
KRT39Q6A163 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC22.64■■□□□ 1.21
KRT39Q6A163 EFS-203ENST00000429593 2610 ntTSL 2 BASIC22.64■■□□□ 1.21
KRT39Q6A163 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC22.64■■□□□ 1.21
KRT39Q6A163 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.21
KRT39Q6A163 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
KRT39Q6A163 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
KRT39Q6A163 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
KRT39Q6A163 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
KRT39Q6A163 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
KRT39Q6A163 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC22.63■■□□□ 1.21
KRT39Q6A163 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
KRT39Q6A163 KRT19P1-201ENST00000405746 1186 ntBASIC22.63■■□□□ 1.21
KRT39Q6A163 NTF6G-201ENST00000591094 616 ntBASIC22.63■■□□□ 1.21
KRT39Q6A163 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC22.63■■□□□ 1.21
KRT39Q6A163 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
KRT39Q6A163 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC22.63■■□□□ 1.21
KRT39Q6A163 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
KRT39Q6A163 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC22.62■■□□□ 1.21
KRT39Q6A163 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
KRT39Q6A163 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
KRT39Q6A163 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
KRT39Q6A163 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC22.62■■□□□ 1.21
KRT39Q6A163 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC22.62■■□□□ 1.21
KRT39Q6A163 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
KRT39Q6A163 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC22.62■■□□□ 1.21
KRT39Q6A163 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
KRT39Q6A163 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
KRT39Q6A163 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
KRT39Q6A163 PKD1P6-201ENST00000343738 4769 ntBASIC22.62■■□□□ 1.21
KRT39Q6A163 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
KRT39Q6A163 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC22.62■■□□□ 1.21
KRT39Q6A163 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC22.62■■□□□ 1.21
KRT39Q6A163 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
KRT39Q6A163 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC22.61■■□□□ 1.21
KRT39Q6A163 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
KRT39Q6A163 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
KRT39Q6A163 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
KRT39Q6A163 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC22.61■■□□□ 1.21
KRT39Q6A163 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
KRT39Q6A163 KRT16P2-201ENST00000414673 1423 ntBASIC22.61■■□□□ 1.21
KRT39Q6A163 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
KRT39Q6A163 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC22.61■■□□□ 1.21
KRT39Q6A163 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
KRT39Q6A163 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC22.61■■□□□ 1.21
KRT39Q6A163 AC120498.10-201ENST00000621827 505 ntBASIC22.61■■□□□ 1.21
KRT39Q6A163 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC22.61■■□□□ 1.21
KRT39Q6A163 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
KRT39Q6A163 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
KRT39Q6A163 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
KRT39Q6A163 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC22.6■■□□□ 1.21
KRT39Q6A163 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
KRT39Q6A163 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC22.6■■□□□ 1.21
KRT39Q6A163 KRT18P20-201ENST00000548986 1279 ntBASIC22.6■■□□□ 1.21
KRT39Q6A163 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC22.6■■□□□ 1.21
KRT39Q6A163 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC22.6■■□□□ 1.21
KRT39Q6A163 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC22.6■■□□□ 1.21
KRT39Q6A163 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC22.6■■□□□ 1.21
KRT39Q6A163 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC22.6■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms