Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC58Q4VC31 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
CCDC58Q4VC31 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC58Q4VC31 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC58Q4VC31 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC58Q4VC31 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC58Q4VC31 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.66■□□□□ 0.58
CCDC58Q4VC31 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
CCDC58Q4VC31 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC58Q4VC31 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CCDC58Q4VC31 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC58Q4VC31 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC58Q4VC31 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC58Q4VC31 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC58Q4VC31 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC58Q4VC31 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC58Q4VC31 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC58Q4VC31 AC003102.1-202ENST00000563394 1796 ntBASIC18.65■□□□□ 0.58
CCDC58Q4VC31 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC58Q4VC31 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CCDC58Q4VC31 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC58Q4VC31 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CCDC58Q4VC31 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC58Q4VC31 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
CCDC58Q4VC31 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC58Q4VC31 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC18.65■□□□□ 0.58
CCDC58Q4VC31 MIR3181-201ENST00000578512 73 ntBASIC18.65■□□□□ 0.58
CCDC58Q4VC31 AC099791.2-201ENST00000605725 427 ntBASIC18.65■□□□□ 0.58
CCDC58Q4VC31 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC58Q4VC31 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC58Q4VC31 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CCDC58Q4VC31 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC58Q4VC31 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC58Q4VC31 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC58Q4VC31 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CCDC58Q4VC31 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC58Q4VC31 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC58Q4VC31 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC58Q4VC31 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CCDC58Q4VC31 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC58Q4VC31 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.64■□□□□ 0.58
CCDC58Q4VC31 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC18.64■□□□□ 0.58
CCDC58Q4VC31 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
CCDC58Q4VC31 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.58
CCDC58Q4VC31 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
CCDC58Q4VC31 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC58Q4VC31 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC58Q4VC31 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC58Q4VC31 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
CCDC58Q4VC31 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CCDC58Q4VC31 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC58Q4VC31 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC18.64■□□□□ 0.57
CCDC58Q4VC31 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC18.64■□□□□ 0.57
CCDC58Q4VC31 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC58Q4VC31 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.57
CCDC58Q4VC31 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC58Q4VC31 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC18.64■□□□□ 0.57
CCDC58Q4VC31 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC58Q4VC31 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC58Q4VC31 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.64■□□□□ 0.57
CCDC58Q4VC31 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC58Q4VC31 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC58Q4VC31 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC18.63■□□□□ 0.57
CCDC58Q4VC31 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC58Q4VC31 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC58Q4VC31 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC58Q4VC31 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CCDC58Q4VC31 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CCDC58Q4VC31 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC58Q4VC31 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC58Q4VC31 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
CCDC58Q4VC31 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC18.63■□□□□ 0.57
CCDC58Q4VC31 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC58Q4VC31 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC58Q4VC31 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC58Q4VC31 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC58Q4VC31 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC58Q4VC31 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC58Q4VC31 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CCDC58Q4VC31 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC58Q4VC31 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC58Q4VC31 AK3-203ENST00000447596 705 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC58Q4VC31 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC58Q4VC31 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC58Q4VC31 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CCDC58Q4VC31 AC092171.4-201ENST00000609130 632 ntBASIC18.62■□□□□ 0.57
CCDC58Q4VC31 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC58Q4VC31 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC58Q4VC31 GATM-206ENST00000558336 1522 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC58Q4VC31 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.62■□□□□ 0.57
CCDC58Q4VC31 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC18.62■□□□□ 0.57
CCDC58Q4VC31 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC58Q4VC31 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC58Q4VC31 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC58Q4VC31 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.62■□□□□ 0.57
CCDC58Q4VC31 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC58Q4VC31 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC58Q4VC31 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC58Q4VC31 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC58Q4VC31 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms