Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTCHD3Q3KNS1 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
PTCHD3Q3KNS1 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
PTCHD3Q3KNS1 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.49■□□□□ 0.87
PTCHD3Q3KNS1 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.49■□□□□ 0.87
PTCHD3Q3KNS1 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PTCHD3Q3KNS1 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PTCHD3Q3KNS1 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PTCHD3Q3KNS1 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.49■□□□□ 0.87
PTCHD3Q3KNS1 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC20.49■□□□□ 0.87
PTCHD3Q3KNS1 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.49■□□□□ 0.87
PTCHD3Q3KNS1 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
PTCHD3Q3KNS1 DLX3-202ENST00000512495 834 ntTSL 2 BASIC20.49■□□□□ 0.87
PTCHD3Q3KNS1 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC20.49■□□□□ 0.87
PTCHD3Q3KNS1 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.49■□□□□ 0.87
PTCHD3Q3KNS1 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PTCHD3Q3KNS1 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PTCHD3Q3KNS1 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
PTCHD3Q3KNS1 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PTCHD3Q3KNS1 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PTCHD3Q3KNS1 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.48■□□□□ 0.87
PTCHD3Q3KNS1 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PTCHD3Q3KNS1 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTCHD3Q3KNS1 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.48■□□□□ 0.87
PTCHD3Q3KNS1 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
PTCHD3Q3KNS1 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTCHD3Q3KNS1 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTCHD3Q3KNS1 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC20.48■□□□□ 0.87
PTCHD3Q3KNS1 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC20.48■□□□□ 0.87
PTCHD3Q3KNS1 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.48■□□□□ 0.87
PTCHD3Q3KNS1 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.48■□□□□ 0.87
PTCHD3Q3KNS1 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.48■□□□□ 0.87
PTCHD3Q3KNS1 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTCHD3Q3KNS1 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTCHD3Q3KNS1 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTCHD3Q3KNS1 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PTCHD3Q3KNS1 AP004607.4-201ENST00000530158 1459 ntBASIC20.48■□□□□ 0.87
PTCHD3Q3KNS1 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTCHD3Q3KNS1 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PTCHD3Q3KNS1 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PTCHD3Q3KNS1 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTCHD3Q3KNS1 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTCHD3Q3KNS1 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.48■□□□□ 0.87
PTCHD3Q3KNS1 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTCHD3Q3KNS1 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PTCHD3Q3KNS1 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTCHD3Q3KNS1 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.47■□□□□ 0.87
PTCHD3Q3KNS1 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
PTCHD3Q3KNS1 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTCHD3Q3KNS1 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.47■□□□□ 0.87
PTCHD3Q3KNS1 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTCHD3Q3KNS1 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTCHD3Q3KNS1 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTCHD3Q3KNS1 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC20.47■□□□□ 0.87
PTCHD3Q3KNS1 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.47■□□□□ 0.87
PTCHD3Q3KNS1 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PTCHD3Q3KNS1 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTCHD3Q3KNS1 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTCHD3Q3KNS1 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTCHD3Q3KNS1 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.46■□□□□ 0.87
PTCHD3Q3KNS1 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.46■□□□□ 0.87
PTCHD3Q3KNS1 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.46■□□□□ 0.87
PTCHD3Q3KNS1 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PTCHD3Q3KNS1 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.46■□□□□ 0.87
PTCHD3Q3KNS1 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTCHD3Q3KNS1 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC20.46■□□□□ 0.87
PTCHD3Q3KNS1 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.46■□□□□ 0.87
PTCHD3Q3KNS1 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.46■□□□□ 0.87
PTCHD3Q3KNS1 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTCHD3Q3KNS1 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTCHD3Q3KNS1 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTCHD3Q3KNS1 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.46■□□□□ 0.87
PTCHD3Q3KNS1 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
PTCHD3Q3KNS1 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.87
PTCHD3Q3KNS1 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PTCHD3Q3KNS1 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PTCHD3Q3KNS1 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.45■□□□□ 0.86
PTCHD3Q3KNS1 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PTCHD3Q3KNS1 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.45■□□□□ 0.86
PTCHD3Q3KNS1 AC079140.4-201ENST00000507448 529 ntBASIC20.45■□□□□ 0.86
PTCHD3Q3KNS1 AC137761.2-201ENST00000561729 223 ntBASIC20.45■□□□□ 0.86
PTCHD3Q3KNS1 AC145350.3-201ENST00000569033 163 ntBASIC20.45■□□□□ 0.86
PTCHD3Q3KNS1 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.45■□□□□ 0.86
PTCHD3Q3KNS1 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.45■□□□□ 0.86
PTCHD3Q3KNS1 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PTCHD3Q3KNS1 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PTCHD3Q3KNS1 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PTCHD3Q3KNS1 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
PTCHD3Q3KNS1 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.44■□□□□ 0.86
PTCHD3Q3KNS1 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTCHD3Q3KNS1 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTCHD3Q3KNS1 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.44■□□□□ 0.86
PTCHD3Q3KNS1 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PTCHD3Q3KNS1 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
PTCHD3Q3KNS1 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTCHD3Q3KNS1 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC20.44■□□□□ 0.86
PTCHD3Q3KNS1 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PTCHD3Q3KNS1 EEF1DP3-203ENST00000566025 782 ntBASIC20.44■□□□□ 0.86
PTCHD3Q3KNS1 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTCHD3Q3KNS1 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms