Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC15.42■□□□□ 0.06
PRKDCP78527 OR2A1-AS1-207ENST00000486094 819 ntBASIC15.42■□□□□ 0.06
PRKDCP78527 HES2-206ENST00000489730 730 ntTSL 2 BASIC15.42■□□□□ 0.06
PRKDCP78527 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PRKDCP78527 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PRKDCP78527 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PRKDCP78527 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
PRKDCP78527 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC15.41■□□□□ 0.06
PRKDCP78527 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC15.41■□□□□ 0.06
PRKDCP78527 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC15.41■□□□□ 0.06
PRKDCP78527 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC15.41■□□□□ 0.06
PRKDCP78527 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
PRKDCP78527 GCK-205ENST00000437084 1385 ntTSL 5 BASIC15.41■□□□□ 0.06
PRKDCP78527 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PRKDCP78527 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC15.41■□□□□ 0.06
PRKDCP78527 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PRKDCP78527 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
PRKDCP78527 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PRKDCP78527 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
PRKDCP78527 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PRKDCP78527 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC15.41■□□□□ 0.06
PRKDCP78527 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
PRKDCP78527 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC15.41■□□□□ 0.06
PRKDCP78527 AL589743.5-201ENST00000616611 1050 ntBASIC15.41■□□□□ 0.06
PRKDCP78527 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PRKDCP78527 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PRKDCP78527 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC15.41■□□□□ 0.06
PRKDCP78527 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
PRKDCP78527 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC15.41■□□□□ 0.06
PRKDCP78527 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
PRKDCP78527 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PRKDCP78527 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC15.41■□□□□ 0.06
PRKDCP78527 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC15.41■□□□□ 0.06
PRKDCP78527 AC100791.3-201ENST00000617619 330 ntBASIC15.41■□□□□ 0.06
PRKDCP78527 AC006557.6-201ENST00000623071 864 ntBASIC15.41■□□□□ 0.06
PRKDCP78527 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PRKDCP78527 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC15.41■□□□□ 0.06
PRKDCP78527 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PRKDCP78527 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PRKDCP78527 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PRKDCP78527 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PRKDCP78527 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC15.41■□□□□ 0.06
PRKDCP78527 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC15.41■□□□□ 0.06
PRKDCP78527 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC15.41■□□□□ 0.06
PRKDCP78527 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC15.41■□□□□ 0.06
PRKDCP78527 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PRKDCP78527 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
PRKDCP78527 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
PRKDCP78527 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
PRKDCP78527 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PRKDCP78527 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
PRKDCP78527 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
PRKDCP78527 AC026471.5-201ENST00000615068 467 ntBASIC15.4■□□□□ 0.06
PRKDCP78527 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC15.4■□□□□ 0.06
PRKDCP78527 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PRKDCP78527 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PRKDCP78527 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PRKDCP78527 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
PRKDCP78527 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PRKDCP78527 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PRKDCP78527 DECR2-212ENST00000627716 352 ntTSL 2 BASIC15.39■□□□□ 0.05
PRKDCP78527 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC15.39■□□□□ 0.05
PRKDCP78527 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PRKDCP78527 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC15.39■□□□□ 0.05
PRKDCP78527 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PRKDCP78527 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC15.39■□□□□ 0.05
PRKDCP78527 THEM4-205ENST00000489410 643 ntTSL 2 BASIC15.39■□□□□ 0.05
PRKDCP78527 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC15.39■□□□□ 0.05
PRKDCP78527 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC15.39■□□□□ 0.05
PRKDCP78527 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PRKDCP78527 AC087633.2-202ENST00000565166 1439 ntBASIC15.39■□□□□ 0.05
PRKDCP78527 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
PRKDCP78527 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PRKDCP78527 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PRKDCP78527 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC15.39■□□□□ 0.05
PRKDCP78527 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC15.39■□□□□ 0.05
PRKDCP78527 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
PRKDCP78527 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
PRKDCP78527 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PRKDCP78527 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PRKDCP78527 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
PRKDCP78527 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PRKDCP78527 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC15.38■□□□□ 0.05
PRKDCP78527 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PRKDCP78527 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
PRKDCP78527 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC15.38■□□□□ 0.05
PRKDCP78527 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC15.38■□□□□ 0.05
PRKDCP78527 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PRKDCP78527 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
PRKDCP78527 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PRKDCP78527 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
PRKDCP78527 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
PRKDCP78527 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PRKDCP78527 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PRKDCP78527 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC15.38■□□□□ 0.05
PRKDCP78527 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PRKDCP78527 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
PRKDCP78527 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC15.37■□□□□ 0.05
PRKDCP78527 NMU-205ENST00000511469 756 ntTSL 3 BASIC15.37■□□□□ 0.05
PRKDCP78527 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms