Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LIM2P55344 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.93■□□□□ 0.78
LIM2P55344 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.92■□□□□ 0.78
LIM2P55344 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIM2P55344 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.92■□□□□ 0.78
LIM2P55344 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
LIM2P55344 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.92■□□□□ 0.78
LIM2P55344 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
LIM2P55344 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.92■□□□□ 0.78
LIM2P55344 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.92■□□□□ 0.78
LIM2P55344 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
LIM2P55344 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
LIM2P55344 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIM2P55344 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
LIM2P55344 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LIM2P55344 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.91■□□□□ 0.78
LIM2P55344 KRT19P1-201ENST00000405746 1186 ntBASIC19.91■□□□□ 0.78
LIM2P55344 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.91■□□□□ 0.78
LIM2P55344 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIM2P55344 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.91■□□□□ 0.78
LIM2P55344 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.91■□□□□ 0.78
LIM2P55344 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.91■□□□□ 0.78
LIM2P55344 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.91■□□□□ 0.78
LIM2P55344 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LIM2P55344 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIM2P55344 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.91■□□□□ 0.78
LIM2P55344 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIM2P55344 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.9■□□□□ 0.78
LIM2P55344 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIM2P55344 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIM2P55344 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIM2P55344 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC19.9■□□□□ 0.78
LIM2P55344 AC010141.2-201ENST00000452426 721 ntBASIC19.9■□□□□ 0.78
LIM2P55344 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.9■□□□□ 0.78
LIM2P55344 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.9■□□□□ 0.78
LIM2P55344 AP001160.3-201ENST00000601484 763 ntBASIC19.9■□□□□ 0.78
LIM2P55344 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIM2P55344 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIM2P55344 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.9■□□□□ 0.78
LIM2P55344 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIM2P55344 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIM2P55344 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIM2P55344 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIM2P55344 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIM2P55344 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.78
LIM2P55344 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.78
LIM2P55344 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIM2P55344 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIM2P55344 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
LIM2P55344 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIM2P55344 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
LIM2P55344 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.89■□□□□ 0.77
LIM2P55344 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.89■□□□□ 0.77
LIM2P55344 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.89■□□□□ 0.77
LIM2P55344 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
LIM2P55344 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.88■□□□□ 0.77
LIM2P55344 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIM2P55344 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIM2P55344 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIM2P55344 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIM2P55344 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIM2P55344 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIM2P55344 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIM2P55344 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIM2P55344 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIM2P55344 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIM2P55344 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIM2P55344 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.88■□□□□ 0.77
LIM2P55344 AC008175.2-201ENST00000612840 297 ntBASIC19.88■□□□□ 0.77
LIM2P55344 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.88■□□□□ 0.77
LIM2P55344 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.88■□□□□ 0.77
LIM2P55344 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.88■□□□□ 0.77
LIM2P55344 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.88■□□□□ 0.77
LIM2P55344 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIM2P55344 AC061975.6-201ENST00000579045 1553 ntBASIC19.87■□□□□ 0.77
LIM2P55344 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIM2P55344 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIM2P55344 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIM2P55344 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIM2P55344 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.87■□□□□ 0.77
LIM2P55344 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LIM2P55344 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.87■□□□□ 0.77
LIM2P55344 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LIM2P55344 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC19.87■□□□□ 0.77
LIM2P55344 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LIM2P55344 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIM2P55344 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIM2P55344 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
LIM2P55344 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LIM2P55344 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIM2P55344 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIM2P55344 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIM2P55344 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIM2P55344 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIM2P55344 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.86■□□□□ 0.77
LIM2P55344 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIM2P55344 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIM2P55344 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIM2P55344 POU5F1P4-201ENST00000413175 1085 ntBASIC19.86■□□□□ 0.77
LIM2P55344 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms