Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC21.97■■□□□ 1.11
EPHB3P54753 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
EPHB3P54753 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
EPHB3P54753 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
EPHB3P54753 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
EPHB3P54753 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
EPHB3P54753 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC21.96■■□□□ 1.11
EPHB3P54753 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC21.96■■□□□ 1.11
EPHB3P54753 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
EPHB3P54753 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
EPHB3P54753 CDV3P1-201ENST00000471403 739 ntBASIC21.96■■□□□ 1.11
EPHB3P54753 RNA5SP413-201ENST00000516373 109 ntBASIC21.96■■□□□ 1.11
EPHB3P54753 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.96■■□□□ 1.11
EPHB3P54753 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
EPHB3P54753 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
EPHB3P54753 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
EPHB3P54753 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.96■■□□□ 1.11
EPHB3P54753 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.11
EPHB3P54753 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
EPHB3P54753 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
EPHB3P54753 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
EPHB3P54753 NARF-205ENST00000412079 1760 ntTSL 5 BASIC21.95■■□□□ 1.1
EPHB3P54753 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
EPHB3P54753 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
EPHB3P54753 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
EPHB3P54753 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
EPHB3P54753 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
EPHB3P54753 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
EPHB3P54753 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
EPHB3P54753 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
EPHB3P54753 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
EPHB3P54753 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC21.95■■□□□ 1.1
EPHB3P54753 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC21.95■■□□□ 1.1
EPHB3P54753 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
EPHB3P54753 AC091799.1-201ENST00000422823 811 ntBASIC21.95■■□□□ 1.1
EPHB3P54753 AC097658.1-201ENST00000475555 843 ntBASIC21.95■■□□□ 1.1
EPHB3P54753 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC21.95■■□□□ 1.1
EPHB3P54753 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC21.95■■□□□ 1.1
EPHB3P54753 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
EPHB3P54753 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
EPHB3P54753 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
EPHB3P54753 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC21.94■■□□□ 1.1
EPHB3P54753 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
EPHB3P54753 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.94■■□□□ 1.1
EPHB3P54753 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.94■■□□□ 1.1
EPHB3P54753 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
EPHB3P54753 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
EPHB3P54753 CASP6-205ENST00000505486 538 ntTSL 4 BASIC21.94■■□□□ 1.1
EPHB3P54753 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC21.94■■□□□ 1.1
EPHB3P54753 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC21.94■■□□□ 1.1
EPHB3P54753 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
EPHB3P54753 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
EPHB3P54753 AC068473.5-201ENST00000616428 2072 ntBASIC21.94■■□□□ 1.1
EPHB3P54753 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC21.94■■□□□ 1.1
EPHB3P54753 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
EPHB3P54753 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
EPHB3P54753 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
EPHB3P54753 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.93■■□□□ 1.1
EPHB3P54753 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
EPHB3P54753 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC21.93■■□□□ 1.1
EPHB3P54753 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
EPHB3P54753 RHEB-204ENST00000472642 900 ntTSL 3 BASIC21.93■■□□□ 1.1
EPHB3P54753 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.93■■□□□ 1.1
EPHB3P54753 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.93■■□□□ 1.1
EPHB3P54753 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC21.93■■□□□ 1.1
EPHB3P54753 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
EPHB3P54753 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
EPHB3P54753 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC21.93■■□□□ 1.1
EPHB3P54753 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
EPHB3P54753 FAM21FP-204ENST00000608637 956 ntBASIC21.93■■□□□ 1.1
EPHB3P54753 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
EPHB3P54753 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
EPHB3P54753 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC21.92■■□□□ 1.1
EPHB3P54753 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
EPHB3P54753 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
EPHB3P54753 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
EPHB3P54753 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
EPHB3P54753 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
EPHB3P54753 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
EPHB3P54753 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
EPHB3P54753 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
EPHB3P54753 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC21.92■■□□□ 1.1
EPHB3P54753 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC21.92■■□□□ 1.1
EPHB3P54753 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC21.92■■□□□ 1.1
EPHB3P54753 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
EPHB3P54753 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
EPHB3P54753 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
EPHB3P54753 AC242852.2-201ENST00000615738 1807 ntBASIC21.92■■□□□ 1.1
EPHB3P54753 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
EPHB3P54753 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
EPHB3P54753 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
EPHB3P54753 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.91■■□□□ 1.1
EPHB3P54753 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
EPHB3P54753 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
EPHB3P54753 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC21.91■■□□□ 1.1
EPHB3P54753 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
EPHB3P54753 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
EPHB3P54753 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC21.91■■□□□ 1.1
EPHB3P54753 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
EPHB3P54753 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms