Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFX3P48380 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
RFX3P48380 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RFX3P48380 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFX3P48380 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC19.62■□□□□ 0.73
RFX3P48380 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFX3P48380 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFX3P48380 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.62■□□□□ 0.73
RFX3P48380 AC027612.3-201ENST00000413684 1047 ntBASIC19.62■□□□□ 0.73
RFX3P48380 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RFX3P48380 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC19.62■□□□□ 0.73
RFX3P48380 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC19.62■□□□□ 0.73
RFX3P48380 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.62■□□□□ 0.73
RFX3P48380 TPRG1LP1-201ENST00000598702 760 ntBASIC19.62■□□□□ 0.73
RFX3P48380 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFX3P48380 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFX3P48380 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.62■□□□□ 0.73
RFX3P48380 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFX3P48380 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC19.62■□□□□ 0.73
RFX3P48380 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.62■□□□□ 0.73
RFX3P48380 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFX3P48380 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.61■□□□□ 0.73
RFX3P48380 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.61■□□□□ 0.73
RFX3P48380 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
RFX3P48380 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.61■□□□□ 0.73
RFX3P48380 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.61■□□□□ 0.73
RFX3P48380 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RFX3P48380 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.61■□□□□ 0.73
RFX3P48380 AC138932.1-201ENST00000534164 6830 ntBASIC19.61■□□□□ 0.73
RFX3P48380 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RFX3P48380 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RFX3P48380 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
RFX3P48380 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
RFX3P48380 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC19.61■□□□□ 0.73
RFX3P48380 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.61■□□□□ 0.73
RFX3P48380 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.61■□□□□ 0.73
RFX3P48380 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.61■□□□□ 0.73
RFX3P48380 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RFX3P48380 AC026310.3-201ENST00000625186 2373 ntBASIC19.61■□□□□ 0.73
RFX3P48380 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RFX3P48380 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RFX3P48380 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.6■□□□□ 0.73
RFX3P48380 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.6■□□□□ 0.73
RFX3P48380 LINC02228-203ENST00000641970 1355 ntBASIC19.6■□□□□ 0.73
RFX3P48380 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.6■□□□□ 0.73
RFX3P48380 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RFX3P48380 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
RFX3P48380 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.6■□□□□ 0.73
RFX3P48380 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC19.6■□□□□ 0.73
RFX3P48380 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
RFX3P48380 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.6■□□□□ 0.73
RFX3P48380 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
RFX3P48380 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RFX3P48380 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RFX3P48380 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RFX3P48380 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RFX3P48380 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RFX3P48380 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.59■□□□□ 0.73
RFX3P48380 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
RFX3P48380 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RFX3P48380 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RFX3P48380 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19.59■□□□□ 0.73
RFX3P48380 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
RFX3P48380 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RFX3P48380 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RFX3P48380 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RFX3P48380 AC079140.4-201ENST00000507448 529 ntBASIC19.59■□□□□ 0.73
RFX3P48380 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.59■□□□□ 0.73
RFX3P48380 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RFX3P48380 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RFX3P48380 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.59■□□□□ 0.73
RFX3P48380 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.59■□□□□ 0.73
RFX3P48380 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.59■□□□□ 0.73
RFX3P48380 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RFX3P48380 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RFX3P48380 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
RFX3P48380 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
RFX3P48380 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.58■□□□□ 0.73
RFX3P48380 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC19.58■□□□□ 0.73
RFX3P48380 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC19.58■□□□□ 0.73
RFX3P48380 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
RFX3P48380 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
RFX3P48380 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
RFX3P48380 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
RFX3P48380 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
RFX3P48380 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
RFX3P48380 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
RFX3P48380 YBX1P1-201ENST00000445822 960 ntBASIC19.58■□□□□ 0.72
RFX3P48380 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
RFX3P48380 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC19.58■□□□□ 0.72
RFX3P48380 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.58■□□□□ 0.72
RFX3P48380 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.58■□□□□ 0.72
RFX3P48380 SLC25A24-204ENST00000569674 2357 ntBASIC19.58■□□□□ 0.72
RFX3P48380 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
RFX3P48380 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.58■□□□□ 0.72
RFX3P48380 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
RFX3P48380 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
RFX3P48380 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
RFX3P48380 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.57■□□□□ 0.72
RFX3P48380 AF106564.1-201ENST00000607058 2553 ntBASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms