Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
MSX2P35548 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC19.98■□□□□ 0.79
MSX2P35548 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
MSX2P35548 Z92544.1-202ENST00000571933 1220 ntBASIC19.98■□□□□ 0.79
MSX2P35548 AC012354.3-201ENST00000623734 483 ntBASIC19.98■□□□□ 0.79
MSX2P35548 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
MSX2P35548 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.98■□□□□ 0.79
MSX2P35548 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
MSX2P35548 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MSX2P35548 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MSX2P35548 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
MSX2P35548 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.98■□□□□ 0.79
MSX2P35548 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
MSX2P35548 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
MSX2P35548 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.97■□□□□ 0.79
MSX2P35548 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
MSX2P35548 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
MSX2P35548 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
MSX2P35548 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC19.97■□□□□ 0.79
MSX2P35548 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC19.97■□□□□ 0.79
MSX2P35548 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC19.97■□□□□ 0.79
MSX2P35548 PRTG-204ENST00000561292 833 ntTSL 3 BASIC19.97■□□□□ 0.79
MSX2P35548 pRNA.6-201ENST00000610482 90 ntBASIC19.97■□□□□ 0.79
MSX2P35548 pRNA.5-201ENST00000612139 90 ntBASIC19.97■□□□□ 0.79
MSX2P35548 pRNA.11-201ENST00000618423 90 ntBASIC19.97■□□□□ 0.79
MSX2P35548 pRNA.13-201ENST00000619112 90 ntBASIC19.97■□□□□ 0.79
MSX2P35548 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
MSX2P35548 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
MSX2P35548 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.97■□□□□ 0.79
MSX2P35548 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
MSX2P35548 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.97■□□□□ 0.79
MSX2P35548 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC19.97■□□□□ 0.79
MSX2P35548 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
MSX2P35548 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.97■□□□□ 0.79
MSX2P35548 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
MSX2P35548 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
MSX2P35548 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
MSX2P35548 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSX2P35548 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSX2P35548 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
MSX2P35548 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.96■□□□□ 0.79
MSX2P35548 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSX2P35548 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSX2P35548 RNF146-205ENST00000477776 762 ntTSL 3 BASIC19.96■□□□□ 0.79
MSX2P35548 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSX2P35548 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSX2P35548 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSX2P35548 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSX2P35548 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
MSX2P35548 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSX2P35548 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
MSX2P35548 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSX2P35548 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
MSX2P35548 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSX2P35548 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
MSX2P35548 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSX2P35548 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.95■□□□□ 0.78
MSX2P35548 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
MSX2P35548 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSX2P35548 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
MSX2P35548 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC19.95■□□□□ 0.78
MSX2P35548 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC19.95■□□□□ 0.78
MSX2P35548 EXOG-217ENST00000630638 197 ntTSL 5 BASIC19.95■□□□□ 0.78
MSX2P35548 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.95■□□□□ 0.78
MSX2P35548 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
MSX2P35548 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSX2P35548 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSX2P35548 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSX2P35548 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSX2P35548 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSX2P35548 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSX2P35548 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSX2P35548 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSX2P35548 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
MSX2P35548 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
MSX2P35548 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
MSX2P35548 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.94■□□□□ 0.78
MSX2P35548 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MSX2P35548 LSM4-201ENST00000252816 986 ntTSL 2 BASIC19.94■□□□□ 0.78
MSX2P35548 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.94■□□□□ 0.78
MSX2P35548 AC010997.5-201ENST00000609182 354 ntBASIC19.94■□□□□ 0.78
MSX2P35548 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.94■□□□□ 0.78
MSX2P35548 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.94■□□□□ 0.78
MSX2P35548 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MSX2P35548 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.94■□□□□ 0.78
MSX2P35548 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.93■□□□□ 0.78
MSX2P35548 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
MSX2P35548 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSX2P35548 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSX2P35548 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
MSX2P35548 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
MSX2P35548 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
MSX2P35548 AL117332.1-201ENST00000622628 974 ntBASIC19.93■□□□□ 0.78
MSX2P35548 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSX2P35548 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
MSX2P35548 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSX2P35548 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSX2P35548 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.93■□□□□ 0.78
MSX2P35548 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.93■□□□□ 0.78
MSX2P35548 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms