Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CIITAP33076 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CIITAP33076 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC23.73■■□□□ 1.39
CIITAP33076 AC090192.1-201ENST00000517740 490 ntBASIC23.73■■□□□ 1.39
CIITAP33076 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC23.73■■□□□ 1.39
CIITAP33076 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
CIITAP33076 FGF8-207ENST00000618991 856 ntTSL 3 BASIC23.73■■□□□ 1.39
CIITAP33076 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC23.73■■□□□ 1.39
CIITAP33076 AC231657.2-201ENST00000624556 255 ntBASIC23.73■■□□□ 1.39
CIITAP33076 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
CIITAP33076 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC23.73■■□□□ 1.39
CIITAP33076 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CIITAP33076 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CIITAP33076 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
CIITAP33076 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CIITAP33076 AC026185.1-201ENST00000445748 174 ntBASIC23.72■■□□□ 1.39
CIITAP33076 PARP1-210ENST00000629232 477 ntTSL 5 BASIC23.72■■□□□ 1.39
CIITAP33076 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CIITAP33076 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC23.72■■□□□ 1.39
CIITAP33076 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC23.72■■□□□ 1.39
CIITAP33076 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CIITAP33076 LINC00565-201ENST00000562710 2331 ntBASIC23.71■■□□□ 1.39
CIITAP33076 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CIITAP33076 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CIITAP33076 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC23.71■■□□□ 1.39
CIITAP33076 AC007322.4-201ENST00000509611 723 ntBASIC23.71■■□□□ 1.39
CIITAP33076 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC23.71■■□□□ 1.39
CIITAP33076 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CIITAP33076 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
CIITAP33076 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CIITAP33076 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
CIITAP33076 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
CIITAP33076 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC23.7■■□□□ 1.38
CIITAP33076 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CIITAP33076 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
CIITAP33076 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CIITAP33076 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC23.7■■□□□ 1.38
CIITAP33076 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC23.7■■□□□ 1.38
CIITAP33076 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
CIITAP33076 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC23.7■■□□□ 1.38
CIITAP33076 AC013268.1-206ENST00000638368 961 ntBASIC23.7■■□□□ 1.38
CIITAP33076 AC112229.1-201ENST00000639295 961 ntBASIC23.7■■□□□ 1.38
CIITAP33076 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.38
CIITAP33076 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC23.7■■□□□ 1.38
CIITAP33076 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
CIITAP33076 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CIITAP33076 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.38
CIITAP33076 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC23.69■■□□□ 1.38
CIITAP33076 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CIITAP33076 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
CIITAP33076 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CIITAP33076 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CIITAP33076 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
CIITAP33076 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC23.69■■□□□ 1.38
CIITAP33076 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC23.69■■□□□ 1.38
CIITAP33076 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
CIITAP33076 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
CIITAP33076 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC23.69■■□□□ 1.38
CIITAP33076 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CIITAP33076 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC23.69■■□□□ 1.38
CIITAP33076 Z98882.1-201ENST00000622160 2253 ntBASIC23.68■■□□□ 1.38
CIITAP33076 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC23.68■■□□□ 1.38
CIITAP33076 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
CIITAP33076 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
CIITAP33076 CROCCP5-201ENST00000436658 830 ntBASIC23.68■■□□□ 1.38
CIITAP33076 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC23.68■■□□□ 1.38
CIITAP33076 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC23.68■■□□□ 1.38
CIITAP33076 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC23.68■■□□□ 1.38
CIITAP33076 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
CIITAP33076 MAZ-216ENST00000616501 991 ntTSL 5 BASIC23.68■■□□□ 1.38
CIITAP33076 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
CIITAP33076 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC23.68■■□□□ 1.38
CIITAP33076 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
CIITAP33076 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
CIITAP33076 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CIITAP33076 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
CIITAP33076 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
CIITAP33076 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
CIITAP33076 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC23.68■■□□□ 1.38
CIITAP33076 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC23.67■■□□□ 1.38
CIITAP33076 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
CIITAP33076 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
CIITAP33076 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC23.67■■□□□ 1.38
CIITAP33076 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
CIITAP33076 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC23.67■■□□□ 1.38
CIITAP33076 AC007322.1-201ENST00000426983 750 ntBASIC23.67■■□□□ 1.38
CIITAP33076 DYM-203ENST00000442713 2147 ntTSL 2 BASIC23.67■■□□□ 1.38
CIITAP33076 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
CIITAP33076 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC23.67■■□□□ 1.38
CIITAP33076 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC23.67■■□□□ 1.38
CIITAP33076 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CIITAP33076 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
CIITAP33076 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC23.67■■□□□ 1.38
CIITAP33076 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CIITAP33076 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC23.67■■□□□ 1.38
CIITAP33076 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC23.66■■□□□ 1.38
CIITAP33076 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC23.66■■□□□ 1.38
CIITAP33076 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC23.66■■□□□ 1.38
CIITAP33076 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC23.66■■□□□ 1.38
CIITAP33076 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms