Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC15.93■□□□□ 0.14
HLA-DMBP28068 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
HLA-DMBP28068 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
HLA-DMBP28068 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC15.93■□□□□ 0.14
HLA-DMBP28068 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC15.93■□□□□ 0.14
HLA-DMBP28068 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC15.93■□□□□ 0.14
HLA-DMBP28068 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HLA-DMBP28068 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
HLA-DMBP28068 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HLA-DMBP28068 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
HLA-DMBP28068 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
HLA-DMBP28068 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC15.93■□□□□ 0.14
HLA-DMBP28068 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC15.93■□□□□ 0.14
HLA-DMBP28068 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HLA-DMBP28068 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HLA-DMBP28068 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
HLA-DMBP28068 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HLA-DMBP28068 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
HLA-DMBP28068 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HLA-DMBP28068 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HLA-DMBP28068 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HLA-DMBP28068 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
HLA-DMBP28068 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
HLA-DMBP28068 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
HLA-DMBP28068 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HLA-DMBP28068 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
HLA-DMBP28068 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
HLA-DMBP28068 PARN-205ENST00000539279 1557 ntTSL 2 BASIC15.92■□□□□ 0.14
HLA-DMBP28068 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC15.92■□□□□ 0.14
HLA-DMBP28068 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HLA-DMBP28068 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HLA-DMBP28068 RASA4CP-201ENST00000424092 1398 ntBASIC15.92■□□□□ 0.14
HLA-DMBP28068 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
HLA-DMBP28068 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HLA-DMBP28068 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
HLA-DMBP28068 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HLA-DMBP28068 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC15.92■□□□□ 0.14
HLA-DMBP28068 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
HLA-DMBP28068 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HLA-DMBP28068 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HLA-DMBP28068 LGR4-203ENST00000480977 492 ntTSL 2 BASIC15.92■□□□□ 0.14
HLA-DMBP28068 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC15.92■□□□□ 0.14
HLA-DMBP28068 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HLA-DMBP28068 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HLA-DMBP28068 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
HLA-DMBP28068 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
HLA-DMBP28068 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HLA-DMBP28068 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
HLA-DMBP28068 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC15.92■□□□□ 0.14
HLA-DMBP28068 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HLA-DMBP28068 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HLA-DMBP28068 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HLA-DMBP28068 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HLA-DMBP28068 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HLA-DMBP28068 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HLA-DMBP28068 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HLA-DMBP28068 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HLA-DMBP28068 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HLA-DMBP28068 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HLA-DMBP28068 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HLA-DMBP28068 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC15.91■□□□□ 0.14
HLA-DMBP28068 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HLA-DMBP28068 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
HLA-DMBP28068 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HLA-DMBP28068 AC099791.1-201ENST00000416440 715 ntBASIC15.91■□□□□ 0.14
HLA-DMBP28068 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC15.91■□□□□ 0.14
HLA-DMBP28068 STOX2-205ENST00000513034 807 ntTSL 3 BASIC15.91■□□□□ 0.14
HLA-DMBP28068 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HLA-DMBP28068 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HLA-DMBP28068 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HLA-DMBP28068 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
HLA-DMBP28068 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC15.9■□□□□ 0.14
HLA-DMBP28068 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HLA-DMBP28068 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HLA-DMBP28068 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HLA-DMBP28068 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HLA-DMBP28068 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
HLA-DMBP28068 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC15.9■□□□□ 0.14
HLA-DMBP28068 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC15.9■□□□□ 0.14
HLA-DMBP28068 IGHV3-19-201ENST00000521488 291 ntBASIC15.9■□□□□ 0.14
HLA-DMBP28068 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
HLA-DMBP28068 LINC01006-201ENST00000333319 2292 ntBASIC15.9■□□□□ 0.14
HLA-DMBP28068 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC15.9■□□□□ 0.14
HLA-DMBP28068 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HLA-DMBP28068 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HLA-DMBP28068 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
HLA-DMBP28068 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HLA-DMBP28068 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HLA-DMBP28068 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HLA-DMBP28068 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC15.89■□□□□ 0.13
HLA-DMBP28068 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
HLA-DMBP28068 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
HLA-DMBP28068 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HLA-DMBP28068 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC15.89■□□□□ 0.13
HLA-DMBP28068 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
HLA-DMBP28068 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HLA-DMBP28068 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HLA-DMBP28068 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HLA-DMBP28068 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC15.89■□□□□ 0.13
HLA-DMBP28068 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms