Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC23.01■■□□□ 1.27
TPM1P09493 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC23.01■■□□□ 1.27
TPM1P09493 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
TPM1P09493 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC23.01■■□□□ 1.27
TPM1P09493 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
TPM1P09493 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
TPM1P09493 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
TPM1P09493 ADM-207ENST00000530439 1839 ntTSL 2 BASIC23.01■■□□□ 1.27
TPM1P09493 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
TPM1P09493 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC23■■□□□ 1.27
TPM1P09493 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
TPM1P09493 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
TPM1P09493 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
TPM1P09493 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
TPM1P09493 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC23■■□□□ 1.27
TPM1P09493 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
TPM1P09493 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
TPM1P09493 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC23■■□□□ 1.27
TPM1P09493 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC23■■□□□ 1.27
TPM1P09493 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC23■■□□□ 1.27
TPM1P09493 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
TPM1P09493 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC23■■□□□ 1.27
TPM1P09493 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC22.99■■□□□ 1.27
TPM1P09493 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
TPM1P09493 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
TPM1P09493 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
TPM1P09493 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
TPM1P09493 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC22.99■■□□□ 1.27
TPM1P09493 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC22.99■■□□□ 1.27
TPM1P09493 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC22.99■■□□□ 1.27
TPM1P09493 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC22.99■■□□□ 1.27
TPM1P09493 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC22.99■■□□□ 1.27
TPM1P09493 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
TPM1P09493 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC22.99■■□□□ 1.27
TPM1P09493 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
TPM1P09493 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC22.99■■□□□ 1.27
TPM1P09493 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC22.99■■□□□ 1.27
TPM1P09493 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
TPM1P09493 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
TPM1P09493 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
TPM1P09493 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
TPM1P09493 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
TPM1P09493 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
TPM1P09493 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC22.98■■□□□ 1.27
TPM1P09493 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
TPM1P09493 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
TPM1P09493 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
TPM1P09493 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
TPM1P09493 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
TPM1P09493 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
TPM1P09493 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
TPM1P09493 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
TPM1P09493 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC22.97■■□□□ 1.27
TPM1P09493 AC138932.1-201ENST00000534164 6830 ntBASIC22.97■■□□□ 1.27
TPM1P09493 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
TPM1P09493 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
TPM1P09493 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC22.97■■□□□ 1.27
TPM1P09493 MIR3621-201ENST00000580529 85 ntBASIC22.97■■□□□ 1.27
TPM1P09493 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
TPM1P09493 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
TPM1P09493 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
TPM1P09493 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC22.97■■□□□ 1.27
TPM1P09493 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC22.97■■□□□ 1.27
TPM1P09493 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC22.97■■□□□ 1.27
TPM1P09493 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
TPM1P09493 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC22.96■■□□□ 1.27
TPM1P09493 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC22.96■■□□□ 1.27
TPM1P09493 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
TPM1P09493 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
TPM1P09493 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC22.96■■□□□ 1.27
TPM1P09493 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
TPM1P09493 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC22.96■■□□□ 1.27
TPM1P09493 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
TPM1P09493 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC22.96■■□□□ 1.27
TPM1P09493 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
TPM1P09493 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
TPM1P09493 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
TPM1P09493 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
TPM1P09493 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
TPM1P09493 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC22.95■■□□□ 1.27
TPM1P09493 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC22.95■■□□□ 1.27
TPM1P09493 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC22.95■■□□□ 1.26
TPM1P09493 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
TPM1P09493 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
TPM1P09493 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
TPM1P09493 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
TPM1P09493 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
TPM1P09493 HES6-206ENST00000409574 738 ntTSL 2 BASIC22.95■■□□□ 1.26
TPM1P09493 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC22.95■■□□□ 1.26
TPM1P09493 OR2A1-AS1-204ENST00000470435 602 ntBASIC22.95■■□□□ 1.26
TPM1P09493 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
TPM1P09493 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC22.95■■□□□ 1.26
TPM1P09493 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
TPM1P09493 AP005435.1-201ENST00000529293 1178 ntBASIC22.95■■□□□ 1.26
TPM1P09493 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC22.95■■□□□ 1.26
TPM1P09493 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
TPM1P09493 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC22.95■■□□□ 1.26
TPM1P09493 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC22.95■■□□□ 1.26
TPM1P09493 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC22.95■■□□□ 1.26
TPM1P09493 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms