Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC20.54■□□□□ 0.88
TNFP01375 C11orf96-202ENST00000528572 1834 ntBASIC20.54■□□□□ 0.88
TNFP01375 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TNFP01375 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TNFP01375 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TNFP01375 AC068473.5-201ENST00000616428 2072 ntBASIC20.54■□□□□ 0.88
TNFP01375 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.53■□□□□ 0.88
TNFP01375 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TNFP01375 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TNFP01375 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TNFP01375 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TNFP01375 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TNFP01375 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TNFP01375 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TNFP01375 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.53■□□□□ 0.88
TNFP01375 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.53■□□□□ 0.88
TNFP01375 AC073210.2-201ENST00000430369 194 ntBASIC20.53■□□□□ 0.88
TNFP01375 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TNFP01375 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.53■□□□□ 0.88
TNFP01375 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.53■□□□□ 0.88
TNFP01375 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TNFP01375 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TNFP01375 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
TNFP01375 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TNFP01375 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TNFP01375 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TNFP01375 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC20.53■□□□□ 0.88
TNFP01375 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.53■□□□□ 0.88
TNFP01375 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TNFP01375 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.52■□□□□ 0.88
TNFP01375 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
TNFP01375 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
TNFP01375 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.52■□□□□ 0.88
TNFP01375 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TNFP01375 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TNFP01375 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TNFP01375 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
TNFP01375 RARRES2P4-201ENST00000514074 484 ntBASIC20.52■□□□□ 0.88
TNFP01375 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.52■□□□□ 0.88
TNFP01375 CD99P1-205ENST00000527459 561 ntBASIC20.52■□□□□ 0.88
TNFP01375 KRT18P6-201ENST00000555540 1265 ntBASIC20.52■□□□□ 0.88
TNFP01375 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TNFP01375 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
TNFP01375 MARS-234ENST00000630571 216 ntTSL 5 BASIC20.52■□□□□ 0.88
TNFP01375 MARS-235ENST00000630803 183 ntTSL 3 BASIC20.52■□□□□ 0.88
TNFP01375 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.52■□□□□ 0.88
TNFP01375 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
TNFP01375 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.51■□□□□ 0.87
TNFP01375 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.51■□□□□ 0.87
TNFP01375 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TNFP01375 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.51■□□□□ 0.87
TNFP01375 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TNFP01375 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.51■□□□□ 0.87
TNFP01375 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.51■□□□□ 0.87
TNFP01375 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
TNFP01375 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TNFP01375 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TNFP01375 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TNFP01375 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TNFP01375 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.5■□□□□ 0.87
TNFP01375 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TNFP01375 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TNFP01375 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.5■□□□□ 0.87
TNFP01375 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TNFP01375 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TNFP01375 CDV3P1-201ENST00000471403 739 ntBASIC20.5■□□□□ 0.87
TNFP01375 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.5■□□□□ 0.87
TNFP01375 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TNFP01375 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TNFP01375 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TNFP01375 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.5■□□□□ 0.87
TNFP01375 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
TNFP01375 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
TNFP01375 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TNFP01375 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TNFP01375 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.49■□□□□ 0.87
TNFP01375 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
TNFP01375 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
TNFP01375 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TNFP01375 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TNFP01375 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TNFP01375 BX276092.2-201ENST00000417668 665 ntBASIC20.49■□□□□ 0.87
TNFP01375 AC091799.1-201ENST00000422823 811 ntBASIC20.49■□□□□ 0.87
TNFP01375 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.49■□□□□ 0.87
TNFP01375 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.49■□□□□ 0.87
TNFP01375 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.49■□□□□ 0.87
TNFP01375 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.49■□□□□ 0.87
TNFP01375 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TNFP01375 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
TNFP01375 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TNFP01375 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.48■□□□□ 0.87
TNFP01375 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TNFP01375 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
TNFP01375 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TNFP01375 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
TNFP01375 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TNFP01375 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TNFP01375 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TNFP01375 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
TNFP01375 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms