Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
NPHP1O15259 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
NPHP1O15259 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
NPHP1O15259 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
NPHP1O15259 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC26.43■■□□□ 1.82
NPHP1O15259 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC26.42■■□□□ 1.82
NPHP1O15259 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
NPHP1O15259 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC26.42■■□□□ 1.82
NPHP1O15259 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC26.42■■□□□ 1.82
NPHP1O15259 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
NPHP1O15259 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC26.42■■□□□ 1.82
NPHP1O15259 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC26.42■■□□□ 1.82
NPHP1O15259 AC026366.1-201ENST00000488803 879 ntBASIC26.42■■□□□ 1.82
NPHP1O15259 UNC93B4-201ENST00000505679 747 ntBASIC26.42■■□□□ 1.82
NPHP1O15259 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC26.42■■□□□ 1.82
NPHP1O15259 MMD2-204ENST00000612910 778 ntTSL 5 BASIC26.42■■□□□ 1.82
NPHP1O15259 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
NPHP1O15259 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC26.42■■□□□ 1.82
NPHP1O15259 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC26.42■■□□□ 1.82
NPHP1O15259 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
NPHP1O15259 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC26.42■■□□□ 1.82
NPHP1O15259 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC26.41■■□□□ 1.82
NPHP1O15259 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC26.41■■□□□ 1.82
NPHP1O15259 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC26.41■■□□□ 1.82
NPHP1O15259 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC26.41■■□□□ 1.82
NPHP1O15259 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
NPHP1O15259 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
NPHP1O15259 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC26.41■■□□□ 1.82
NPHP1O15259 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC26.41■■□□□ 1.82
NPHP1O15259 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC26.41■■□□□ 1.82
NPHP1O15259 AP003097.1-201ENST00000530657 1135 ntBASIC26.41■■□□□ 1.82
NPHP1O15259 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
NPHP1O15259 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
NPHP1O15259 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
NPHP1O15259 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC26.4■■□□□ 1.82
NPHP1O15259 AC087742.1-201ENST00000575880 1738 ntBASIC26.4■■□□□ 1.82
NPHP1O15259 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC26.4■■□□□ 1.82
NPHP1O15259 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC26.4■■□□□ 1.82
NPHP1O15259 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
NPHP1O15259 UNC93B5-201ENST00000530315 699 ntBASIC26.4■■□□□ 1.82
NPHP1O15259 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC26.4■■□□□ 1.82
NPHP1O15259 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC26.4■■□□□ 1.82
NPHP1O15259 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC26.4■■□□□ 1.82
NPHP1O15259 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC26.4■■□□□ 1.82
NPHP1O15259 AC139530.1-201ENST00000575312 1977 ntBASIC26.4■■□□□ 1.82
NPHP1O15259 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
NPHP1O15259 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
NPHP1O15259 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
NPHP1O15259 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
NPHP1O15259 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
NPHP1O15259 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
NPHP1O15259 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
NPHP1O15259 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC26.39■■□□□ 1.82
NPHP1O15259 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC26.39■■□□□ 1.82
NPHP1O15259 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC26.39■■□□□ 1.82
NPHP1O15259 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC26.39■■□□□ 1.82
NPHP1O15259 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
NPHP1O15259 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC26.39■■□□□ 1.81
NPHP1O15259 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC26.39■■□□□ 1.81
NPHP1O15259 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
NPHP1O15259 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC26.38■■□□□ 1.81
NPHP1O15259 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
NPHP1O15259 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
NPHP1O15259 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC26.38■■□□□ 1.81
NPHP1O15259 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC26.38■■□□□ 1.81
NPHP1O15259 AC073648.6-201ENST00000641589 218 ntBASIC26.38■■□□□ 1.81
NPHP1O15259 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
NPHP1O15259 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
NPHP1O15259 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC26.37■■□□□ 1.81
NPHP1O15259 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
NPHP1O15259 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
NPHP1O15259 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC26.37■■□□□ 1.81
NPHP1O15259 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC26.37■■□□□ 1.81
NPHP1O15259 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
NPHP1O15259 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC26.37■■□□□ 1.81
NPHP1O15259 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC26.37■■□□□ 1.81
NPHP1O15259 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
NPHP1O15259 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
NPHP1O15259 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC26.37■■□□□ 1.81
NPHP1O15259 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
NPHP1O15259 AC133561.1-201ENST00000568600 2415 ntBASIC26.36■■□□□ 1.81
NPHP1O15259 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
NPHP1O15259 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC26.36■■□□□ 1.81
NPHP1O15259 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC26.36■■□□□ 1.81
NPHP1O15259 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC26.36■■□□□ 1.81
NPHP1O15259 CASP6-205ENST00000505486 538 ntTSL 4 BASIC26.36■■□□□ 1.81
NPHP1O15259 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC26.36■■□□□ 1.81
NPHP1O15259 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC26.36■■□□□ 1.81
NPHP1O15259 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
NPHP1O15259 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC26.36■■□□□ 1.81
NPHP1O15259 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
NPHP1O15259 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC26.36■■□□□ 1.81
NPHP1O15259 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
NPHP1O15259 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
NPHP1O15259 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
NPHP1O15259 PEX7-202ENST00000367756 680 ntTSL 3 BASIC26.35■■□□□ 1.81
NPHP1O15259 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC26.35■■□□□ 1.81
NPHP1O15259 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC26.35■■□□□ 1.81
NPHP1O15259 AL355472.2-201ENST00000422958 438 ntBASIC26.35■■□□□ 1.81
NPHP1O15259 AL596275.1-201ENST00000423464 877 ntBASIC26.35■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms