Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC17.77■□□□□ 0.44
SDCBPO00560 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
SDCBPO00560 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
SDCBPO00560 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
SDCBPO00560 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
SDCBPO00560 PEMT-206ENST00000435340 960 ntTSL 5 BASIC17.77■□□□□ 0.44
SDCBPO00560 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC17.77■□□□□ 0.44
SDCBPO00560 AC024257.2-201ENST00000549699 147 ntBASIC17.77■□□□□ 0.44
SDCBPO00560 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
SDCBPO00560 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
SDCBPO00560 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC17.77■□□□□ 0.43
SDCBPO00560 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
SDCBPO00560 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC17.77■□□□□ 0.43
SDCBPO00560 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
SDCBPO00560 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
SDCBPO00560 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SDCBPO00560 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
SDCBPO00560 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SDCBPO00560 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
SDCBPO00560 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SDCBPO00560 SNX3-202ENST00000349379 890 ntTSL 2 BASIC17.76■□□□□ 0.43
SDCBPO00560 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SDCBPO00560 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC17.76■□□□□ 0.43
SDCBPO00560 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SDCBPO00560 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SDCBPO00560 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC17.76■□□□□ 0.43
SDCBPO00560 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC17.76■□□□□ 0.43
SDCBPO00560 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SDCBPO00560 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC17.75■□□□□ 0.43
SDCBPO00560 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
SDCBPO00560 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SDCBPO00560 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SDCBPO00560 BX842568.3-201ENST00000418104 571 ntBASIC17.75■□□□□ 0.43
SDCBPO00560 AC096631.2-201ENST00000436136 790 ntBASIC17.75■□□□□ 0.43
SDCBPO00560 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC17.75■□□□□ 0.43
SDCBPO00560 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC17.75■□□□□ 0.43
SDCBPO00560 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC17.75■□□□□ 0.43
SDCBPO00560 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SDCBPO00560 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC17.75■□□□□ 0.43
SDCBPO00560 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SDCBPO00560 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SDCBPO00560 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
SDCBPO00560 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SDCBPO00560 AL121603.2-201ENST00000557373 2117 ntBASIC17.75■□□□□ 0.43
SDCBPO00560 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
SDCBPO00560 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SDCBPO00560 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC17.75■□□□□ 0.43
SDCBPO00560 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC17.74■□□□□ 0.43
SDCBPO00560 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
SDCBPO00560 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDCBPO00560 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDCBPO00560 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SDCBPO00560 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDCBPO00560 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDCBPO00560 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDCBPO00560 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SDCBPO00560 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
SDCBPO00560 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDCBPO00560 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDCBPO00560 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
SDCBPO00560 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDCBPO00560 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC17.74■□□□□ 0.43
SDCBPO00560 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDCBPO00560 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDCBPO00560 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC17.74■□□□□ 0.43
SDCBPO00560 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC17.74■□□□□ 0.43
SDCBPO00560 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC17.74■□□□□ 0.43
SDCBPO00560 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SDCBPO00560 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
SDCBPO00560 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SDCBPO00560 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDCBPO00560 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDCBPO00560 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDCBPO00560 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SDCBPO00560 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SDCBPO00560 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SDCBPO00560 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SDCBPO00560 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
SDCBPO00560 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC17.73■□□□□ 0.43
SDCBPO00560 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SDCBPO00560 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC17.73■□□□□ 0.43
SDCBPO00560 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC17.73■□□□□ 0.43
SDCBPO00560 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SDCBPO00560 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC17.73■□□□□ 0.43
SDCBPO00560 AC233992.3-201ENST00000607491 485 ntBASIC17.73■□□□□ 0.43
SDCBPO00560 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC17.73■□□□□ 0.43
SDCBPO00560 PARN-205ENST00000539279 1557 ntTSL 2 BASIC17.73■□□□□ 0.43
SDCBPO00560 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SDCBPO00560 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
SDCBPO00560 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SDCBPO00560 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
SDCBPO00560 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SDCBPO00560 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
SDCBPO00560 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SDCBPO00560 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC17.72■□□□□ 0.43
SDCBPO00560 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SDCBPO00560 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC17.72■□□□□ 0.43
SDCBPO00560 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
SDCBPO00560 AC003102.1-202ENST00000563394 1796 ntBASIC17.72■□□□□ 0.43
SDCBPO00560 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms