Protein–RNA interactions for Protein: Q9Y6Z2

LINC01558, Uncharacterized protein encoded by LINC01558, humanhuman

Predictions only

Length 57 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01558Q9Y6Z2 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
LINC01558Q9Y6Z2 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
LINC01558Q9Y6Z2 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
LINC01558Q9Y6Z2 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
LINC01558Q9Y6Z2 AL121749.1-202ENST00000609313 2153 ntBASIC14.15□□□□□ -0.15
LINC01558Q9Y6Z2 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
LINC01558Q9Y6Z2 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LINC01558Q9Y6Z2 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LINC01558Q9Y6Z2 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LINC01558Q9Y6Z2 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
LINC01558Q9Y6Z2 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
LINC01558Q9Y6Z2 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
LINC01558Q9Y6Z2 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC14.13□□□□□ -0.15
LINC01558Q9Y6Z2 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
LINC01558Q9Y6Z2 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LINC01558Q9Y6Z2 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LINC01558Q9Y6Z2 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC14.12□□□□□ -0.15
LINC01558Q9Y6Z2 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
LINC01558Q9Y6Z2 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC14.12□□□□□ -0.15
LINC01558Q9Y6Z2 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC14.11□□□□□ -0.15
LINC01558Q9Y6Z2 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
LINC01558Q9Y6Z2 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LINC01558Q9Y6Z2 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC14.11□□□□□ -0.15
LINC01558Q9Y6Z2 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
LINC01558Q9Y6Z2 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
LINC01558Q9Y6Z2 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
LINC01558Q9Y6Z2 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LINC01558Q9Y6Z2 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC14.1□□□□□ -0.15
LINC01558Q9Y6Z2 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
LINC01558Q9Y6Z2 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
LINC01558Q9Y6Z2 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
LINC01558Q9Y6Z2 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LINC01558Q9Y6Z2 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
LINC01558Q9Y6Z2 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC14.09□□□□□ -0.15
LINC01558Q9Y6Z2 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC14.09□□□□□ -0.15
LINC01558Q9Y6Z2 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
LINC01558Q9Y6Z2 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LINC01558Q9Y6Z2 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC14.07□□□□□ -0.16
LINC01558Q9Y6Z2 AC145285.7-201ENST00000614819 1539 ntBASIC14.07□□□□□ -0.16
LINC01558Q9Y6Z2 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LINC01558Q9Y6Z2 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC14.07□□□□□ -0.16
LINC01558Q9Y6Z2 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC14.07□□□□□ -0.16
LINC01558Q9Y6Z2 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC14.07□□□□□ -0.16
LINC01558Q9Y6Z2 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC01558Q9Y6Z2 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC01558Q9Y6Z2 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
LINC01558Q9Y6Z2 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC01558Q9Y6Z2 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
LINC01558Q9Y6Z2 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LINC01558Q9Y6Z2 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
LINC01558Q9Y6Z2 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LINC01558Q9Y6Z2 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LINC01558Q9Y6Z2 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC14.04□□□□□ -0.16
LINC01558Q9Y6Z2 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC01558Q9Y6Z2 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC01558Q9Y6Z2 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC14.04□□□□□ -0.16
LINC01558Q9Y6Z2 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC14.04□□□□□ -0.16
LINC01558Q9Y6Z2 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC01558Q9Y6Z2 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC01558Q9Y6Z2 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC01558Q9Y6Z2 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC01558Q9Y6Z2 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC01558Q9Y6Z2 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC01558Q9Y6Z2 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC01558Q9Y6Z2 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
LINC01558Q9Y6Z2 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
LINC01558Q9Y6Z2 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
LINC01558Q9Y6Z2 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC14.02□□□□□ -0.17
LINC01558Q9Y6Z2 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
LINC01558Q9Y6Z2 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
LINC01558Q9Y6Z2 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC01558Q9Y6Z2 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC14.01□□□□□ -0.17
LINC01558Q9Y6Z2 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC01558Q9Y6Z2 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC01558Q9Y6Z2 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LINC01558Q9Y6Z2 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
LINC01558Q9Y6Z2 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LINC01558Q9Y6Z2 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC14.01□□□□□ -0.17
LINC01558Q9Y6Z2 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC01558Q9Y6Z2 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01558Q9Y6Z2 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01558Q9Y6Z2 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
LINC01558Q9Y6Z2 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01558Q9Y6Z2 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LINC01558Q9Y6Z2 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
LINC01558Q9Y6Z2 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
LINC01558Q9Y6Z2 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
LINC01558Q9Y6Z2 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
LINC01558Q9Y6Z2 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC01558Q9Y6Z2 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LINC01558Q9Y6Z2 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
LINC01558Q9Y6Z2 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LINC01558Q9Y6Z2 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC13.95□□□□□ -0.18
LINC01558Q9Y6Z2 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LINC01558Q9Y6Z2 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LINC01558Q9Y6Z2 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
LINC01558Q9Y6Z2 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
LINC01558Q9Y6Z2 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LINC01558Q9Y6Z2 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC13.94□□□□□ -0.18
LINC01558Q9Y6Z2 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 8.2 ms