Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
DDX4Q9NQI0 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
DDX4Q9NQI0 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC32.07■■■□□ 2.72
DDX4Q9NQI0 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
DDX4Q9NQI0 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC32.06■■■□□ 2.72
DDX4Q9NQI0 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
DDX4Q9NQI0 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC32.04■■■□□ 2.72
DDX4Q9NQI0 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
DDX4Q9NQI0 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC32.02■■■□□ 2.72
DDX4Q9NQI0 MIR6090-201ENST00000622481 60 ntBASIC32.02■■■□□ 2.72
DDX4Q9NQI0 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC32.02■■■□□ 2.72
DDX4Q9NQI0 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC32.01■■■□□ 2.71
DDX4Q9NQI0 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
DDX4Q9NQI0 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC32■■■□□ 2.71
DDX4Q9NQI0 DUX4L29-201ENST00000425409 679 ntBASIC31.98■■■□□ 2.71
DDX4Q9NQI0 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC31.98■■■□□ 2.71
DDX4Q9NQI0 AC021231.2-201ENST00000594613 730 ntBASIC31.97■■■□□ 2.71
DDX4Q9NQI0 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
DDX4Q9NQI0 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC31.96■■■□□ 2.71
DDX4Q9NQI0 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
DDX4Q9NQI0 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC31.95■■■□□ 2.71
DDX4Q9NQI0 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
DDX4Q9NQI0 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
DDX4Q9NQI0 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
DDX4Q9NQI0 MBP-237ENST00000579129 1052 ntTSL 5 BASIC31.95■■■□□ 2.71
DDX4Q9NQI0 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
DDX4Q9NQI0 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC31.94■■■□□ 2.7
DDX4Q9NQI0 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC31.93■■■□□ 2.7
DDX4Q9NQI0 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
DDX4Q9NQI0 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC31.93■■■□□ 2.7
DDX4Q9NQI0 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC31.93■■■□□ 2.7
DDX4Q9NQI0 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
DDX4Q9NQI0 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
DDX4Q9NQI0 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC31.91■■■□□ 2.7
DDX4Q9NQI0 HLA-V-202ENST00000446817 847 ntBASIC31.9■■■□□ 2.7
DDX4Q9NQI0 AC108673.1-201ENST00000510422 1159 ntBASIC31.9■■■□□ 2.7
DDX4Q9NQI0 CIB2-204ENST00000557846 934 ntTSL 3 BASIC31.9■■■□□ 2.7
DDX4Q9NQI0 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC31.9■■■□□ 2.7
DDX4Q9NQI0 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC31.89■■■□□ 2.7
DDX4Q9NQI0 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC31.89■■■□□ 2.69
DDX4Q9NQI0 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC31.86■■■□□ 2.69
DDX4Q9NQI0 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC31.86■■■□□ 2.69
DDX4Q9NQI0 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC31.86■■■□□ 2.69
DDX4Q9NQI0 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC31.85■■■□□ 2.69
DDX4Q9NQI0 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
DDX4Q9NQI0 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
DDX4Q9NQI0 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
DDX4Q9NQI0 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
DDX4Q9NQI0 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC31.84■■■□□ 2.69
DDX4Q9NQI0 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
DDX4Q9NQI0 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC31.83■■■□□ 2.69
DDX4Q9NQI0 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
DDX4Q9NQI0 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC31.82■■■□□ 2.68
DDX4Q9NQI0 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
DDX4Q9NQI0 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC31.82■■■□□ 2.68
DDX4Q9NQI0 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
DDX4Q9NQI0 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC31.81■■■□□ 2.68
DDX4Q9NQI0 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC31.81■■■□□ 2.68
DDX4Q9NQI0 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
DDX4Q9NQI0 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC31.8■■■□□ 2.68
DDX4Q9NQI0 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
DDX4Q9NQI0 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC31.8■■■□□ 2.68
DDX4Q9NQI0 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC31.79■■■□□ 2.68
DDX4Q9NQI0 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
DDX4Q9NQI0 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC31.77■■■□□ 2.68
DDX4Q9NQI0 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
DDX4Q9NQI0 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC31.76■■■□□ 2.67
DDX4Q9NQI0 RPS2-202ENST00000526522 924 ntTSL 2 BASIC31.75■■■□□ 2.67
DDX4Q9NQI0 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC31.73■■■□□ 2.67
DDX4Q9NQI0 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC31.73■■■□□ 2.67
DDX4Q9NQI0 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC31.73■■■□□ 2.67
DDX4Q9NQI0 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC31.73■■■□□ 2.67
DDX4Q9NQI0 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC31.71■■■□□ 2.67
DDX4Q9NQI0 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC31.71■■■□□ 2.67
DDX4Q9NQI0 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
DDX4Q9NQI0 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
DDX4Q9NQI0 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
DDX4Q9NQI0 AL161658.1-201ENST00000623641 1967 ntBASIC31.68■■■□□ 2.66
DDX4Q9NQI0 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
DDX4Q9NQI0 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
DDX4Q9NQI0 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
DDX4Q9NQI0 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
DDX4Q9NQI0 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
DDX4Q9NQI0 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
DDX4Q9NQI0 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC31.65■■■□□ 2.66
DDX4Q9NQI0 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC31.64■■■□□ 2.66
DDX4Q9NQI0 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC31.64■■■□□ 2.66
DDX4Q9NQI0 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
DDX4Q9NQI0 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
DDX4Q9NQI0 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
DDX4Q9NQI0 MACF1-219ENST00000484793 834 ntTSL 2 BASIC31.62■■■□□ 2.65
DDX4Q9NQI0 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC31.61■■■□□ 2.65
DDX4Q9NQI0 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
DDX4Q9NQI0 RNF166-209ENST00000567844 633 ntTSL 5 BASIC31.61■■■□□ 2.65
DDX4Q9NQI0 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
DDX4Q9NQI0 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC31.58■■■□□ 2.65
DDX4Q9NQI0 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC31.58■■■□□ 2.65
DDX4Q9NQI0 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
DDX4Q9NQI0 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC31.58■■■□□ 2.65
DDX4Q9NQI0 LINC01971-201ENST00000617888 1048 ntBASIC31.57■■■□□ 2.64
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms