Protein–RNA interactions for Protein: Q8WWA1

TMEM40, Transmembrane protein 40, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM40Q8WWA1 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
TMEM40Q8WWA1 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC29.49■■■□□ 2.31
TMEM40Q8WWA1 ZNRF2P2-203ENST00000454624 420 ntBASIC29.49■■■□□ 2.31
TMEM40Q8WWA1 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
TMEM40Q8WWA1 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC29.48■■■□□ 2.31
TMEM40Q8WWA1 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
TMEM40Q8WWA1 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC29.47■■■□□ 2.31
TMEM40Q8WWA1 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC29.47■■■□□ 2.31
TMEM40Q8WWA1 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
TMEM40Q8WWA1 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC29.45■■■□□ 2.31
TMEM40Q8WWA1 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
TMEM40Q8WWA1 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC29.44■■■□□ 2.3
TMEM40Q8WWA1 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
TMEM40Q8WWA1 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC29.42■■■□□ 2.3
TMEM40Q8WWA1 MIR6090-201ENST00000622481 60 ntBASIC29.42■■■□□ 2.3
TMEM40Q8WWA1 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC29.4■■■□□ 2.3
TMEM40Q8WWA1 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC29.4■■■□□ 2.3
TMEM40Q8WWA1 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC29.4■■■□□ 2.3
TMEM40Q8WWA1 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
TMEM40Q8WWA1 DUX4L29-201ENST00000425409 679 ntBASIC29.39■■■□□ 2.3
TMEM40Q8WWA1 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
TMEM40Q8WWA1 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
TMEM40Q8WWA1 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
TMEM40Q8WWA1 AC021231.2-201ENST00000594613 730 ntBASIC29.38■■■□□ 2.29
TMEM40Q8WWA1 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC29.38■■■□□ 2.29
TMEM40Q8WWA1 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC29.37■■■□□ 2.29
TMEM40Q8WWA1 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC29.37■■■□□ 2.29
TMEM40Q8WWA1 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC29.36■■■□□ 2.29
TMEM40Q8WWA1 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
TMEM40Q8WWA1 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC29.36■■■□□ 2.29
TMEM40Q8WWA1 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
TMEM40Q8WWA1 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
TMEM40Q8WWA1 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC29.35■■■□□ 2.29
TMEM40Q8WWA1 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
TMEM40Q8WWA1 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
TMEM40Q8WWA1 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC29.34■■■□□ 2.29
TMEM40Q8WWA1 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
TMEM40Q8WWA1 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
TMEM40Q8WWA1 AC108673.1-201ENST00000510422 1159 ntBASIC29.33■■■□□ 2.29
TMEM40Q8WWA1 CIB2-204ENST00000557846 934 ntTSL 3 BASIC29.33■■■□□ 2.29
TMEM40Q8WWA1 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC29.33■■■□□ 2.29
TMEM40Q8WWA1 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
TMEM40Q8WWA1 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
TMEM40Q8WWA1 MBP-237ENST00000579129 1052 ntTSL 5 BASIC29.32■■■□□ 2.28
TMEM40Q8WWA1 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
TMEM40Q8WWA1 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
TMEM40Q8WWA1 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC29.29■■■□□ 2.28
TMEM40Q8WWA1 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
TMEM40Q8WWA1 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC29.27■■■□□ 2.28
TMEM40Q8WWA1 HLA-V-202ENST00000446817 847 ntBASIC29.27■■■□□ 2.28
TMEM40Q8WWA1 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
TMEM40Q8WWA1 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC29.26■■■□□ 2.27
TMEM40Q8WWA1 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
TMEM40Q8WWA1 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC29.25■■■□□ 2.27
TMEM40Q8WWA1 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
TMEM40Q8WWA1 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC29.24■■■□□ 2.27
TMEM40Q8WWA1 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC29.24■■■□□ 2.27
TMEM40Q8WWA1 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
TMEM40Q8WWA1 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC29.23■■■□□ 2.27
TMEM40Q8WWA1 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
TMEM40Q8WWA1 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC29.23■■■□□ 2.27
TMEM40Q8WWA1 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC29.23■■■□□ 2.27
TMEM40Q8WWA1 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC29.23■■■□□ 2.27
TMEM40Q8WWA1 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
TMEM40Q8WWA1 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
TMEM40Q8WWA1 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC29.22■■■□□ 2.27
TMEM40Q8WWA1 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC29.22■■■□□ 2.27
TMEM40Q8WWA1 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
TMEM40Q8WWA1 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC29.21■■■□□ 2.27
TMEM40Q8WWA1 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC29.19■■■□□ 2.26
TMEM40Q8WWA1 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC29.18■■■□□ 2.26
TMEM40Q8WWA1 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC29.18■■■□□ 2.26
TMEM40Q8WWA1 AL161658.1-201ENST00000623641 1967 ntBASIC29.17■■■□□ 2.26
TMEM40Q8WWA1 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
TMEM40Q8WWA1 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC29.16■■■□□ 2.26
TMEM40Q8WWA1 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
TMEM40Q8WWA1 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC29.15■■■□□ 2.26
TMEM40Q8WWA1 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC29.15■■■□□ 2.26
TMEM40Q8WWA1 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
TMEM40Q8WWA1 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
TMEM40Q8WWA1 RPS2-202ENST00000526522 924 ntTSL 2 BASIC29.13■■■□□ 2.25
TMEM40Q8WWA1 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC29.13■■■□□ 2.25
TMEM40Q8WWA1 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC29.13■■■□□ 2.25
TMEM40Q8WWA1 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
TMEM40Q8WWA1 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC29.12■■■□□ 2.25
TMEM40Q8WWA1 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC29.11■■■□□ 2.25
TMEM40Q8WWA1 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
TMEM40Q8WWA1 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
TMEM40Q8WWA1 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
TMEM40Q8WWA1 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
TMEM40Q8WWA1 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
TMEM40Q8WWA1 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
TMEM40Q8WWA1 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC29.09■■■□□ 2.25
TMEM40Q8WWA1 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
TMEM40Q8WWA1 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC29.08■■■□□ 2.25
TMEM40Q8WWA1 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC29.08■■■□□ 2.25
TMEM40Q8WWA1 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
TMEM40Q8WWA1 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC29.07■■■□□ 2.24
TMEM40Q8WWA1 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
TMEM40Q8WWA1 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
Retrieved 100 of 98,524 protein–RNA pairs in 9.5 ms