Protein–RNA interactions for Protein: Q8TBC3

SHKBP1, SH3KBP1-binding protein 1, humanhuman

Predictions only

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1Q8TBC3 ZNRF2P2-203ENST00000454624 420 ntBASIC28.2■■■□□ 2.1
SHKBP1Q8TBC3 HGH1-207ENST00000628266 258 ntTSL 5 BASIC28.19■■■□□ 2.1
SHKBP1Q8TBC3 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC28.18■■■□□ 2.1
SHKBP1Q8TBC3 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
SHKBP1Q8TBC3 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC28.17■■■□□ 2.1
SHKBP1Q8TBC3 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC28.16■■■□□ 2.1
SHKBP1Q8TBC3 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC28.15■■■□□ 2.1
SHKBP1Q8TBC3 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
SHKBP1Q8TBC3 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
SHKBP1Q8TBC3 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC28.15■■■□□ 2.1
SHKBP1Q8TBC3 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
SHKBP1Q8TBC3 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
SHKBP1Q8TBC3 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC28.13■■■□□ 2.09
SHKBP1Q8TBC3 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC28.13■■■□□ 2.09
SHKBP1Q8TBC3 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
SHKBP1Q8TBC3 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC28.11■■■□□ 2.09
SHKBP1Q8TBC3 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC28.11■■■□□ 2.09
SHKBP1Q8TBC3 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC28.11■■■□□ 2.09
SHKBP1Q8TBC3 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC28.11■■■□□ 2.09
SHKBP1Q8TBC3 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC28.1■■■□□ 2.09
SHKBP1Q8TBC3 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC28.1■■■□□ 2.09
SHKBP1Q8TBC3 DUX4L29-201ENST00000425409 679 ntBASIC28.09■■■□□ 2.09
SHKBP1Q8TBC3 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
SHKBP1Q8TBC3 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
SHKBP1Q8TBC3 MBP-237ENST00000579129 1052 ntTSL 5 BASIC28.08■■■□□ 2.09
SHKBP1Q8TBC3 HLA-V-202ENST00000446817 847 ntBASIC28.07■■■□□ 2.08
SHKBP1Q8TBC3 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
SHKBP1Q8TBC3 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
SHKBP1Q8TBC3 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
SHKBP1Q8TBC3 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
SHKBP1Q8TBC3 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
SHKBP1Q8TBC3 AC021231.2-201ENST00000594613 730 ntBASIC28.04■■■□□ 2.08
SHKBP1Q8TBC3 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC28.04■■■□□ 2.08
SHKBP1Q8TBC3 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
SHKBP1Q8TBC3 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
SHKBP1Q8TBC3 MIR6090-201ENST00000622481 60 ntBASIC28.03■■■□□ 2.08
SHKBP1Q8TBC3 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
SHKBP1Q8TBC3 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC28.02■■■□□ 2.08
SHKBP1Q8TBC3 CIB2-204ENST00000557846 934 ntTSL 3 BASIC28.02■■■□□ 2.08
SHKBP1Q8TBC3 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
SHKBP1Q8TBC3 AC108673.1-201ENST00000510422 1159 ntBASIC28.01■■■□□ 2.07
SHKBP1Q8TBC3 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
SHKBP1Q8TBC3 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC28.01■■■□□ 2.07
SHKBP1Q8TBC3 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
SHKBP1Q8TBC3 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC28■■■□□ 2.07
SHKBP1Q8TBC3 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC28■■■□□ 2.07
SHKBP1Q8TBC3 AC120057.4-201ENST00000624722 1615 ntBASIC28■■■□□ 2.07
SHKBP1Q8TBC3 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC27.99■■■□□ 2.07
SHKBP1Q8TBC3 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
SHKBP1Q8TBC3 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
SHKBP1Q8TBC3 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC27.98■■■□□ 2.07
SHKBP1Q8TBC3 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC27.98■■■□□ 2.07
SHKBP1Q8TBC3 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC27.97■■■□□ 2.07
SHKBP1Q8TBC3 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC27.97■■■□□ 2.07
SHKBP1Q8TBC3 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
SHKBP1Q8TBC3 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
SHKBP1Q8TBC3 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC27.96■■■□□ 2.07
SHKBP1Q8TBC3 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC27.96■■■□□ 2.07
SHKBP1Q8TBC3 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC27.95■■■□□ 2.07
SHKBP1Q8TBC3 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC27.95■■■□□ 2.06
SHKBP1Q8TBC3 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC27.95■■■□□ 2.06
SHKBP1Q8TBC3 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC27.94■■■□□ 2.06
SHKBP1Q8TBC3 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
SHKBP1Q8TBC3 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC27.93■■■□□ 2.06
SHKBP1Q8TBC3 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
SHKBP1Q8TBC3 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
SHKBP1Q8TBC3 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC27.93■■■□□ 2.06
SHKBP1Q8TBC3 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
SHKBP1Q8TBC3 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC27.92■■■□□ 2.06
SHKBP1Q8TBC3 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC27.91■■■□□ 2.06
SHKBP1Q8TBC3 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC27.9■■■□□ 2.06
SHKBP1Q8TBC3 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC27.9■■■□□ 2.06
SHKBP1Q8TBC3 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC27.89■■■□□ 2.06
SHKBP1Q8TBC3 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
SHKBP1Q8TBC3 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.05
SHKBP1Q8TBC3 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.05
SHKBP1Q8TBC3 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC27.88■■■□□ 2.05
SHKBP1Q8TBC3 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC27.88■■■□□ 2.05
SHKBP1Q8TBC3 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC27.87■■■□□ 2.05
SHKBP1Q8TBC3 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC27.86■■■□□ 2.05
SHKBP1Q8TBC3 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC27.86■■■□□ 2.05
SHKBP1Q8TBC3 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
SHKBP1Q8TBC3 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC27.85■■■□□ 2.05
SHKBP1Q8TBC3 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC27.85■■■□□ 2.05
SHKBP1Q8TBC3 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
SHKBP1Q8TBC3 RPS2-202ENST00000526522 924 ntTSL 2 BASIC27.84■■■□□ 2.05
SHKBP1Q8TBC3 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
SHKBP1Q8TBC3 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC27.83■■■□□ 2.05
SHKBP1Q8TBC3 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC27.82■■■□□ 2.04
SHKBP1Q8TBC3 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC27.82■■■□□ 2.04
SHKBP1Q8TBC3 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC27.82■■■□□ 2.04
SHKBP1Q8TBC3 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC27.82■■■□□ 2.04
SHKBP1Q8TBC3 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC27.82■■■□□ 2.04
SHKBP1Q8TBC3 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
SHKBP1Q8TBC3 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
SHKBP1Q8TBC3 MACF1-219ENST00000484793 834 ntTSL 2 BASIC27.79■■■□□ 2.04
SHKBP1Q8TBC3 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
SHKBP1Q8TBC3 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
SHKBP1Q8TBC3 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
SHKBP1Q8TBC3 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms