Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
FOXA3P55318 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
FOXA3P55318 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC19.94■□□□□ 0.78
FOXA3P55318 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
FOXA3P55318 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
FOXA3P55318 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
FOXA3P55318 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
FOXA3P55318 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC19.9■□□□□ 0.78
FOXA3P55318 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
FOXA3P55318 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
FOXA3P55318 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
FOXA3P55318 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
FOXA3P55318 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC19.9■□□□□ 0.78
FOXA3P55318 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
FOXA3P55318 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
FOXA3P55318 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC19.89■□□□□ 0.77
FOXA3P55318 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
FOXA3P55318 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
FOXA3P55318 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
FOXA3P55318 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC19.88■□□□□ 0.77
FOXA3P55318 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
FOXA3P55318 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
FOXA3P55318 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
FOXA3P55318 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC19.85■□□□□ 0.77
FOXA3P55318 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
FOXA3P55318 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
FOXA3P55318 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
FOXA3P55318 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC19.85■□□□□ 0.77
FOXA3P55318 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
FOXA3P55318 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
FOXA3P55318 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
FOXA3P55318 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
FOXA3P55318 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
FOXA3P55318 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
FOXA3P55318 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
FOXA3P55318 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
FOXA3P55318 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
FOXA3P55318 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
FOXA3P55318 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
FOXA3P55318 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
FOXA3P55318 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
FOXA3P55318 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
FOXA3P55318 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
FOXA3P55318 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
FOXA3P55318 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
FOXA3P55318 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
FOXA3P55318 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
FOXA3P55318 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC19.79■□□□□ 0.76
FOXA3P55318 MVK-208ENST00000539696 608 ntTSL 5 BASIC19.79■□□□□ 0.76
FOXA3P55318 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC19.79■□□□□ 0.76
FOXA3P55318 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
FOXA3P55318 AC135731.1-201ENST00000569415 2548 ntBASIC19.78■□□□□ 0.76
FOXA3P55318 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
FOXA3P55318 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
FOXA3P55318 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
FOXA3P55318 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
FOXA3P55318 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
FOXA3P55318 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
FOXA3P55318 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
FOXA3P55318 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
FOXA3P55318 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
FOXA3P55318 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
FOXA3P55318 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
FOXA3P55318 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
FOXA3P55318 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
FOXA3P55318 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
FOXA3P55318 AL135925.1-201ENST00000605920 1701 ntBASIC19.75■□□□□ 0.75
FOXA3P55318 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
FOXA3P55318 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC19.74■□□□□ 0.75
FOXA3P55318 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
FOXA3P55318 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
FOXA3P55318 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
FOXA3P55318 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
FOXA3P55318 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
FOXA3P55318 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
FOXA3P55318 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
FOXA3P55318 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
FOXA3P55318 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
FOXA3P55318 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
FOXA3P55318 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
FOXA3P55318 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC19.7■□□□□ 0.74
FOXA3P55318 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
FOXA3P55318 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
FOXA3P55318 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC19.69■□□□□ 0.74
FOXA3P55318 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
FOXA3P55318 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
FOXA3P55318 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC19.69■□□□□ 0.74
FOXA3P55318 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
FOXA3P55318 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
FOXA3P55318 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
FOXA3P55318 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
FOXA3P55318 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
FOXA3P55318 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
FOXA3P55318 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
FOXA3P55318 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC19.67■□□□□ 0.74
FOXA3P55318 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
FOXA3P55318 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
FOXA3P55318 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
FOXA3P55318 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC19.66■□□□□ 0.74
FOXA3P55318 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms